Skip to main content

Table 4 Alternative splicing events detected in cDNAs, all G-Mo.R-Se models, and CDS portions of G-Mo.R-Se models

From: Annotating genomes with massive-scale RNA sequencing

  cDNAs: 7,895 loci Models (all): 19,486 loci Models (CDS): 12,341 loci   
  Number (%) Number (%) Number (%) Events common to cDNAs and models % of cDNA events
Alternative acceptor/donor 690 (73.1%) 7,405 (62.5%) 2,988 (58.0%) 156 22.6
Skipped 250 (26.5%) 3,656 (30.9%) 1,677 (32.5%) 18 7.2
Mutually exclusive 4 (0.4%) 781 (6.6%) 487 (9.5%) 1 25.0
Intron retention 1,227 - - - -
Total 2,171 (944 without IR) 11,842 5,152 175 18.5
Total number of loci with alternative splicing (% of all identified loci) 783 (9.9%) (598 without IR) 1,602 (8.2%) 1,029 (8.3%) - -