Table 1 Genetic polymorphism for the concatenated sequences
From: Chlamydia trachomatisdiversity viewed as a tissue-specific coevolutionary arms race
Loci categories | |||||
|---|---|---|---|---|---|
IGRs | HKs | HPs | CEPs | Total | |
Size | 3,834 | 7,984 | 3,906 | 35,350 | 51,074 |
Variable sites* | 192 (5.0%) | 267 (3.3%) | 402 (10.3%) | 1800 (5.1%) | 2,662 (5.2%) |
Parsimony informative sites† | 147 (76.6%) | 233 (87.3%) | 372 (92.5%) | 1,656 (92.0%) | 2,408 (90.5%) |
Overall mean distance (nucleotides) | 65.8 (SE 4.7) | 96.4 (SE 5.3) | 168.1 (SE 7.6) | 701.9 (SE 15.6) | 1,032.1 (SE 17.2) |
Overall mean p-distance (nucleotides) | 0.0172 (SE 0.0013) | 0.0121 (SE 0.0007) | 0.0430 (SE 0.0020) | 0.0199 (SE 0.0004) | 0.0202 (SE 0.0003) |