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Table 1 Occurrences of PAX2/5/8 candidate target genes predicted from matrices A and B in mouse (GXD) and zebrafish (ZFIN) databases

From: Rapid identification of PAX2/5/8 direct downstream targets in the otic vesicle by combinatorial use of bioinformatics tools

  Matrix A Matrix B Matrices A+B Total genes
Candidate genes 486 195 672 22,242
Genes described in GXD 209 96 301 7,080
Genes described in ZFIN 135 55 188 5,623
Genes described in GXD and ZFIN 274 122 392 10,082
Genes expressed in ear in GXD 52 14 66 1,267
Genes expressed in ear in ZFIN 18 6 24 5,72
Genes expressed in ear in GXD and ZFIN 64 19 83 1,717
  1. Numbers in bold are the values used to construct the contingency table, used for the calculation of the over-representation of genes expressed in the otic.