Table 6 Physicochemical properties used by the FEATURE algorithm

ATOM-TYPE-IS-C

PARTIAL-CHARGE

RESIDUE_NAME_IS_ALA

SECONDARY_STRUCTURE1_IS_3HELIX

ATOM-TYPE-IS-CT

HYDROXYL

RESIDUE_NAME_IS_ARG

SECONDARY_STRUCTURE1_IS_4HELIX

ATOM-TYPE-IS-Ca

AMIDE

RESIDUE_NAME_IS_ASN

SECONDARY_STRUCTURE1_IS_5HELIX

ATOM-TYPE-IS-N

AMINE

RESIDUE_NAME_IS_ASP

SECONDARY_STRUCTURE1_IS_BRIDGE

ATOM-TYPE-IS-N2

CARBONYL

RESIDUE_NAME_IS_CYS

SECONDARY_STRUCTURE1_IS_STRAND

ATOM-TYPE-IS-N3

RING-SYSTEM

RESIDUE_NAME_IS_GLN

SECONDARY_STRUCTURE1_IS_TURN

ATOM-TYPE-IS-Na

PEPTIDE

RESIDUE_NAME_IS_GLU

SECONDARY_STRUCTURE1_IS_BEND

ATOM-TYPE-IS-O

VDW-VOLUME

RESIDUE_NAME_IS_GLY

SECONDARY_STRUCTURE1_IS_COIL

ATOM-TYPE-IS-O2

CHARGE

RESIDUE_NAME_IS_HIS

SECONDARY_STRUCTURE1_IS_HET

ATOM-TYPE-IS-OH

NEG-CHARGE

RESIDUE_NAME_IS_ILE

SECONDARY_STRUCTURE1_IS_UNKNOWN

ATOM-TYPE-IS-S

POS-CHARGE

RESIDUE_NAME_IS_LEU

SECONDARY_STRUCTURE1_IS_HELIX

ATOM-TYPE-IS-SH

CHARGE-WITH-HIS

RESIDUE_NAME_IS_LYS

SECONDARY_STRUCTURE1_IS_BETA

ATOM-TYPE-IS-OTHER

HYDROPHOBICITY

RESIDUE_NAME_IS_MET

SECONDARY_STRUCTURE1_IS_COIL

ATOM-NAME-IS-ANY

MOBILITY

RESIDUE_NAME_IS_PHE

SECONDARY_STRUCTURE1_IS_HET

ATOM-NAME-IS-C

SOLVENT-ACCESSIBILITY

RESIDUE_NAME_IS_PRO

SECONDARY_STRUCTURE1_IS_UNKNOWN

ATOM-NAME-IS-N

RESIDUE_NAME_IS_SER

ATOM-NAME-IS-O

RESIDUE_NAME_IS_THR

ATOM-NAME-IS-S

RESIDUE_NAME_IS_TRP

ATOM-NAME-IS-OTHER

RESIDUE_NAME_IS_TYR

RESIDUE_NAME_IS_VAL

RESIDUE_NAME_IS_HOH

RESIDUE_NAME_IS_OTHER

CLASS1_IS_HYDROPHOBIC

CLASS1_IS_CHARGED

CLASS1_IS_POLAR

CLASS1_IS_UNKNOWN

CLASS2_IS_NONPOLAR

CLASS2_IS_POLAR

CLASS2_IS_BASIC

CLASS2_IS_ACIDIC

CLASS2_IS_UNKNOWN