| |
All genes
|
Genes with Entrez ID
|
One-to-one probe/gene mapping
|
Consistent present/absent call
|
Present and consistent
|
|---|
|
ISH (ABA)
| | | | | |
|
Striatum
|
25,739
|
21,677
|
17,066
|
16,877
|
8,919
|
|
Cortex
|
25,749
|
21,683
|
17,077
|
16,848
|
11,358
|
|
Cerebellum
|
25,754
|
21,690
|
17,075
|
16,850
|
11,393
|
|
Hippocampus
|
25,766
|
21,691
|
17,074
|
16,897
|
11,465
|
|
Olfactory bulb
|
25,748
|
21,686
|
17,078
|
16,853
|
11,979
|
|
Hypothalamus
|
25,715
|
21,652
|
16,593
|
16,465
|
7,188
|
|
Microarray (Teragenomics)
| | | | | |
|
Striatum
|
12,488
|
11,779
|
7,062
|
6,026
|
3,499
|
|
Cortex
|
12,488
|
11,779
|
7,062
|
5,958
|
3,488
|
|
Cerebellum
|
12,488
|
11,779
|
7,062
|
6,066
|
3,470
|
|
Hippocampus
|
12,488
|
11,779
|
7,062
|
5,997
|
3,363
|
|
Olfactory bulb
|
12,488
|
11,779
|
7,062
|
5,987
|
3,593
|
|
Hypothalamus
|
12,488
|
11,779
|
7,062
|
6,099
|
4,000
|
|
Microarray (GNF)
| | | | | |
|
Striatum
|
31,770
|
26,982
|
13,582
|
11,713
|
3,438
|
|
Cortex
|
31,770
|
26,982
|
13,582
|
12,845
|
4,746
|
|
Cerebellum
|
31,770
|
26,982
|
13,582
|
11,773
|
4,121
|
|
Hippocampus
|
31,770
|
26,982
|
13,582
|
11,777
|
3,837
|
|
Olfactory bulb
|
31,770
|
26,982
|
13,582
|
11,885
|
4,123
|
|
Hypothalamus
|
31,770
|
26,982
|
13,582
|
11,869
|
4,341
|
- Tabulated numbers show the number of genes satisfying the given criteria. Consistent present/absent reduces gene counts from one-to-one probe/gene mapping for genes with inconsistent replicates or genes with ambiguous expression call. (The ABA data contain a limited number of sagittal replicates: striatum 698, cortex 700, cerebellum 697, hippocampus 699, olfactory bulb 700, and hypothalamus 666.) The final column indicates those genes that are labeled as having present expression by present/absent calling algorithms for each platform minus those genes without consistent calls for those data available in replicate.
