High-resolution analysis of condition-specific regulatory modules in Saccharomyces cerevisiae

Table 1 Number of IMCs, EPMs, RMs and their average number of member genes and regulators

				Average no. of genes/transcription factors
Condition	No. of survived IMCs	No. of EPMs	No. of RMs (average number of RMs per EPM)	IMC	EPM	RM	No. of confirmed transcription factors (average number of targets per transcription factor)
Heat shock	249	14	88 (6.3)	9.8/3.2	102.7/11.6	58.9/3.0	67 (96.6)
Nitrogen depletion	340	24	166 (6.9)	9.1/3.3	77.5/13.1	40.3/3.1	96 (78.0)
Cell cycle	77	9	35 (3.9)	7.5/2.9	36.3/7.3	26.6/3.0	43 (31.5)

For each condition, we calculated the number of retained IMCs that have at least one confirmed transcription factor. And then, total numbers of EPMs and RMs were counted. We also calculated the average number of genes and transcription factors per IMC, EPM and RM.

ISSN: 1474-760X