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Table 1 Characteristics of the test data. Contents of the Ross data set [26] of expression profiles of childhood acute lymphoblastic leukemias (ALL). The elements indicate the numbers of cases of each leukemic subtype, as defined by cytogenetic and molecular genetic criteria according to the World Health Organization (WHO) classification system [27]. Also outlined are the clinical characteristics and defining genetic change of each leukemic subtype.

From: An improved method for detecting and delineating genomic regions with altered gene expression in cancer

Leukemic subtype

Number of cases

Clinical characteristics

B-cell ALL, Hyperdiploid (> 50 chromosomes)

17

Around 25% of childhood ALL cases, favor-able prognosis, gains of chromosomes X, 4, 6, 8, 10, 14, 17, 18 or 21.

B-cell ALL, TCF3/PBX1 gene fusion

18

Around 5% of cases, poor prognosis without intensive treatment, gene fusion corresponds to a balanced translocation between chromo- somes 1 and 19.

B-cell ALL, ETV6/RUNX1 gene fusion

20

Around 25% of cases, favorable prognosis, gene fusion corresponds to a balanced trans- location between chromosomes 12 and 21.

B-cell ALL, BCR/ABL1 gene fusion

15

Around 3% of cases, unfavorable prognosis, gene fusion corresponds to a balanced trans- location between chromosomes 9 and 22.

B-cell ALL, MLL fusions

20

Around 80% of cases in infants, about 5% of older children, unfavorable prognosis, gene fusions correspond to various structural re- arrangements of chromosome band 11q23.

T-cell ALL

14

Unfavorable prognosis.