Table 1 Suspicious regions in the human chromosome 1 alignment
From: Measuring the accuracy of genome-size multiple alignments
Species | Aligned residues | Residues in suspicious regions | Suspicious regions | Residues with high phastCons score in suspicious regions | |||
|---|---|---|---|---|---|---|---|
Chimp | 211,636,048 | (86%) | 7,722 | (0.004%) | 103 | 174 | (2.3%) |
Rhesus | 198,482,753 | (80%) | 32,789 | (0.02%) | 358 | 214 | (0.7%) |
Rabbit | 87,544,213 | (35%) | 2,053,030 | (2.3%) | 24,210 | 24,037 | (1.2%) |
Mouse | 92,668,918 | (37%) | 3,033,524 | (3.3%) | 36,594 | 25,175 | (0.8%) |
Rat | 87,532,024 | (35%) | 3,141,584 | (3.6%) | 37,231 | 34,373 | (1.1%) |
Dog | 132,538,114 | (54%) | 1,661,141 | (1.3%) | 19,277 | 8,383 | (0.5%) |
Cow | 124,582,989 | (50%) | 1,524,553 | (1.2%) | 18,020 | 6,563 | (0.4%) |
Armadillo | 81,991,879 | (33%) | 1,451,731 | (1.8%) | 17,306 | 25,172 | (1.7%) |
Elephant | 88,888,989 | (36%) | 2,047,450 | (2.3%) | 23,089 | 30,143 | (1.5%) |
Tenrec | 67,619,223 | (27%) | 2,495,171 | (3.7%) | 26,697 | 26,611 | (1.1%) |
Opossum | 31,534,309 | (13%) | 4,657,853 | (14.8%) | 41,302 | 120,445 | (2.6%) |
Chicken | 9,106,790 | (4%) | 2,363,996 | (26.0%) | 18,397 | 235,152 | (9.9%) |
Frog | 5,916,044 | (2%) | 1,432,427 | (24.2%) | 10,947 | 219,613 | (15.3%) |
Tetraodon | 5,167,534 | (2%) | 1,765,895 | (34.2%) | 9,508 | 240,568 | (13.6%) |
Fugu | 4,630,234 | (2%) | 1,167,357 | (25.2%) | 8,437 | 169,851 | (14.6%) |
Zebrafish | 5,855,213 | (2%) | 1,669,490 | (28.5%) | 10,963 | 324,159 | (19.4%) |
All species | 219,711,964 | (89%) | 21,334,060 | (9.7%) | 185,452 | 1,127,826 | (5.3%) |