Table 1 KEGG metabolic pathways for Saccharomyces cerevisiae and number of elementary modes for each
Pathway identifier | Pathway name | Number of computed elementary modes | in BlastSets |
|---|---|---|---|
sce00010 | Glycolysis/gluconeogenesis | 163 | 112 |
sce00020 | Citrate cycle (TCA cycle) | 99 | 60 |
sce00030 | Pentose phosphate pathway | 206 | 203 |
sce00040 | Pentose and glucuronate interconversions | 4 | 2 |
sce00051 | Fructose and mannose metabolism | 12 | 11 |
sce00052 | Galactose metabolism | 81 | 63 |
sce00053 | Ascorbate and aldarate metabolism | 2 | 2 |
sce00061 | Fatty acid biosynthesis | 4 | 3 |
sce00071 | Fatty acid metabolism | 22 | 20 |
sce00072 | Synthesis and degradation of ketone bodies | 4 | 2 |
sce00100 | Biosynthesis of steroids | 6 | 5 |
sce00120 | Bile acid biosynthesis | 5 | 4 |
sce00130 | Ubiquinone biosynthesis | 4 | 1 |
sce00190 | Oxidative phosphorylation | 7 | 7 |
sce00220 | Urea cycle and metabolism of amino groups | 12 | 11 |
sce00230 | Purine metabolism | 350 | 346 |
sce00240 | Pyrimidine metabolism | 31 | 28 |
sce00251 | Glutamate metabolism | 40 | 38 |
sce00252 | Alanine and aspartate metabolism | 43 | 39 |
sce00260 | Glycine, serine and threonine metabolism | 102 | 94 |
sce00271 | Methionine metabolism | 26 | 25 |
sce00272 | Cysteine metabolism | 14 | 12 |
sce00280 | Valine, leucine and isoleucine degradation | 8 | 7 |
sce00290 | Valine, leucine and isoleucine biosynthesis | 12 | 11 |
sce00300 | Lysine biosynthesis | 5 | 4 |
sce00310 | Lysine degradation | 6 | 5 |
sce00330 | Arginine and proline metabolism | 29 | 24 |
sce00340 | Histidine metabolism | 5 | 4 |
sce00350 | Tyrosine metabolism | 11 | 8 |
sce00360 | Phenylalanine metabolism | 3 | 3 |
sce00361 | gamma-Hexachlorocyclohexane degradation | 6 | 1 |
sce00362 | Benzoate degradation via hydroxylation | 3 | 0 |
sce00380 | Tryptophan metabolism | 15 | 8 |
sce00400 | Phenylalanine, tyrosine and tryptophan biosynthesis | 38 | 30 |
sce00401 | Novobiocin biosynthesis | 6 | 2 |
sce00410 | beta-Alanine metabolism | 6 | 6 |
sce00430 | Taurine and hypotaurine metabolism | 2 | 1 |
sce00440 | Aminophosphonate metabolism | 5 | 3 |
sce00450 | Selenoamino acid metabolism | 6 | 5 |
sce00460 | Cyanoamino acid metabolism | 9 | 2 |
sce00480 | Glutathione metabolism | 5 | 4 |
sce00500 | Starch and sucrose metabolism | 49 | 47 |
sce00520 | Nucleotide sugars metabolism | 15 | 11 |
sce00521 | Streptomycin biosynthesis | 2 | 1 |
sce00530 | Aminosugars metabolism | 13 | 13 |
sce00550 | Peptidoglycan biosynthesis | 3 | 0 |
sce00561 | Glycerolipid metabolism | 7 | 4 |
sce00562 | Inositol phosphate metabolism | 5 | 4 |
sce00563 | Glycosylphosphatidylinositol (GPI)-anchor biosynthesis | 3 | 0 |
sce00564 | Glycerophospholipid metabolism | 28 | 25 |
sce00590 | Arachidonic acid metabolism | 4 | 2 |
sce00600 | Glycosphingolipid metabolism | 7 | 5 |
sce00620 | Pyruvate metabolism | 139 | 132 |
sce00624 | 1- and 2-Methylnaphthalene degradation | 7 | 3 |
sce00625 | Tetrachloroethene degradation | 4 | 1 |
sce00627 | 1,4-Dichlorobenzene degradation | 9 | 0 |
sce00630 | Glyoxylate and dicarboxylate metabolism | 7 | 6 |
sce00632 | Benzoate degradation via CoA ligation | 7 | 2 |
sce00640 | Propanoate metabolism | 8 | 4 |
sce00650 | Butanoate metabolism | 9 | 7 |
sce00670 | One carbon pool by folate | 13 | 12 |
sce00680 | Methane metabolism | 5 | 3 |
sce00710 | Carbon fixation | 13 | 8 |
sce00720 | Reductive carboxylate cycle (CO2 fixation) | 3 | 3 |
sce00730 | Thiamine metabolism | 2 | 0 |
sce00740 | Riboflavin metabolism | 3 | 2 |
sce00750 | Vitamin B6 metabolism | 4 | 2 |
sce00760 | Nicotinate and nicotinamide metabolism | 9 | 8 |
sce00770 | Pantothenate and CoA biosynthesis | 4 | 3 |
sce00780 | Biotin metabolism | 1 | 1 |
sce00790 | Folate biosynthesis | 17 | 6 |
sce00860 | Porphyrin and chlorophyll metabolism | 4 | 3 |
sce00900 | Terpenoid biosynthesis | 9 | 8 |
sce00903 | Limonene and pinene degradation | 9 | 2 |
sce00910 | Nitrogen metabolism | 17 | 15 |
sce00920 | Sulfur metabolism | 3 | 2 |
sce00960 | Alkaloid biosynthesis II | 3 | 3 |
sce00970 | Aminoacyl-tRNA biosynthesis | 20 | 15 |
sce00980 | Metabolism of xenobiotics by cytochrome P450 | 2 | 2 |
sce04070 | Phosphatidylinositol signaling system | 4 | 4 |