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Table 5 cDNA sequence isolated by GLGI from novel LongSAGE tags

From: LongSAGE analysis of skeletal muscle at three prenatal stages in Tongcheng and Landrace pigs

LongSAGE tag

Product size (bp)*

No. of UniGene matches

Abundance

   

T33

T65

T90

L33

L65

L90

CCCCATTGTACTTGAAC

116,81,92

 

10

0

8

5

5

6

CCCATTGTACTCGAACT

117,214

 

1

0

2

1

4

3

CCCATTGTACCTGAACT

134,402,116,151,73

 

3

0

2

0

1

3

CCCATTGTACTGGAACT

106,74

 

2

0

0

0

0

0

CCCATTGTACTTGAGCT

74,92,114

 

2

0

1

0

3

2

CCCATTGTACCTTGAAC

121

 

1

0

1

1

0

0

CCCATTGTACTTGACTT

115

 

1

0

1

0

1

1

CCCATTGTACTTGAACC

136,116

 

5

1

4

12

4

11

CCCATTGTACTTGGACT

102,128

 

3

0

3

0

8

2

CCCATTGTACTTGCACT

118

 

1

0

0

0

0

0

ACAGGAACTCCTTGCCT

104

 

1

0

0

0

0

0

TCTGGAGAAGTGGGGAG

77

 

5

0

1

0

0

0

CAGTTCTCCCACCTTAT

96

 

6

0

2

14

1

0

GGGCGTCTAAATGTGAA

89,115,121

 

1

14

1

1

1

0

TTCTTGATCTCTTCCTG

119,127

 

1

12

12

1

8

13

GCCACATCCTTTCTCCC

189,161,116,98,145

 

1

10

11

0

6

3

GACGAGATGGAGTTCAC

94,107,100

 

1

7

0

1

0

0

GATCGGGACATTGGGGC

87,81

 

1

8

5

1

6

3

GAGAAAACGAAGACAAG

136,65

 

2

12

12

0

6

5

GAAAATTGCCCCCCCCC

113,77

 

1

7

2

0

0

0

GACTAGCAATTTCGGTT

55,68

 

1

6

2

4

10

9

GGGCTGCTTTTTGTCAC

58,156

 

1

7

2

1

1

2

TGCTAGATTGGAGTGGG

93,124,150

 

1

6

1

2

8

4

AAGCTGTGGTTTGATCC

82

 

13

5

13

10

6

8

AGACAGACAGTTGCTGG

97,161

 

9

2

3

5

5

3

AGCATCCCAAACAAACA

79,116

 

27

13

46

15

26

49

ATGGGCCGTTAATAAAG

73

 

28

11

15

36

34

35

CAAACTCTTGCCCCGAT

73

1,458

7

1

3

1

1

0

CAGCAGGTGCTCAATAA

106

32,297

14

5

2

9

10

3

CCAACACTCATAGCAAT

71,161,100

 

16

6

16

22

16

27

CCCATTGGACTTGAACT

247

 

11

3

0

2

0

0

CCCATTGTACTTGAACT

134

 

448

130

577

501

448

515

GAACGCCTAATAAAGCA

106

32,126

9

2

5

7

1

8

CCTGACCCCACACGCCT

69

 

24

0

7

0

1

0

AGTAAACGGGCTGCTCC

134

 

10

0

2

0

0

0

TAGAGGTGCTGTCTATG

189,142

 

10

0

0

8

0

0

CTACTTTAGCACCTGCT

218

 

8

0

10

4

7

9

TCAAGCCTAGCAGTCTA

142

 

27

5

22

11

4

15

TGAATTTTGCATTCCAT

122

27,615

14

2

8

7

8

3

GTAGGGGAAGGAGGAGG

109,96

 

14

5

11

0

0

0

GGCTTCGGCTTGTTTGC

170,89

 

11

3

8

7

6

2

TGCCCTTTCCCCAAAGC

94

 

11

1

4

3

3

4

ATCTGCCGTTAATAAAG

89

947

207

81

211

167

220

219

CTGATTGGAACTGTATT

152

31,595

200

81

151

212

181

152

GGCTTCGGCTTGTTTGA

240

791

199

254

173

290

237

186

GCCCTGGGGCCTCAATA

92

37,210

111

158

96

118

123

75

GATTCCGTGAAGGAACA

73

19,414

54

56

67

78

68

57

AGGTTGCGGGTTCGGTC

113

23,946

54

65

35

83

86

62

GTTCGTGCCAAATTCCG

228

6,701

51

82

29

39

36

44

AAGATCAAGATTATTGC

159

10,316

22

47

36

9

41

20

CAGGGGCTTCAGTTGAT

364,239

 

0

0

0

29

23

32

ATTAAGAGGGACGGCCG

146

 

19

14

6

1

22

10

CACGCTTTCTTCAAAGC

302

 

3

5

13

24

9

34

GCGTGAATGTGAGCAGG

127,149

 

2

11

8

1

3

4

CGTGGGCAAAGCTGAAG

122,147

 

8

24

11

14

22

10

CTCGTTCTGAAATAAAG

68,168,186

 

1

19

76

1

37

70

AGGATGCCGGTACGATC

189,170,107

 

7

23

7

14

18

7

TCTCAGAATTAGCTTTG

89

22,100

5

20

17

3

14

20

GTTTTGCTGCTTCCCAA

132

 

2

18

9

0

8

15

CCTGCCCTGCCCTATTC

77,68

 

4

16

0

4

3

0

AGCTATGGCTTAGGCCA

161,126

 

1

11

3

0

1

0

TTTACTCAACCTTTGGT

96,169

13,955

3

28

37

1

21

21

TGGGCAGCCTTCCCTTC

221

 

1

11

4

0

2

1

CCAGAAGTAAGGCTTTC

123

 

5

16

10

0

0

0

AATCCAGGATGCGGCTG

70,173

 

1

9

0

0

4

3

GCATCTAGCTCCTCATT

151

 

1

16

8

1

2

2

TCGGACGTACATCGTTA

145

 

4

13

10

14

9

7

  1. All cDNA sequences obtained from GLGI analysis were deposited in the NCBI database (Additional data file 8). *Multiple values indicate that more than one sequence was obtained from a tag in the GLGI experiment, and these sequences were of different lengths.
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Genome Biology

ISSN: 1474-760X

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