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Table 3 TFBSs associated with differential up-regulation of p53 target genes

From: A distance difference matrix approach to identifying transcription factors that regulate differential gene expression

Identifier P value Q-value Factor name Reference
V.P300_01 0.001 0.032 P300 [69]
V.GATA1_01 0.000 0.032 GATA-1 [40]
V.CEBPA_01 0.001 0.032 C/EBP  
V.CEBP_01 0.000 0.032 C/EBP  
V.AP3_Q6 0.000 0.032 AP3  
V.GATA2_01 0.004 0.047 GATA-2 [70]
V.CEBPB_01 0.004 0.047 C/EBP  
V.HNF4_Q6 0.004 0.048 HNF4 [71]
V.CDPCR3HD_01 0.005 0.052 CDP CR3  
V.STAT6_01 0.005 0.052 STAT6  
V.CEBP_Q2 0.005 0.052 C/EBP  
V.STAT5A_03 0.008 0.058 STAT5A [41]
V.MYOGENIN_Q6 0.010 0.058 myogenin  
V.POU1F1_Q6 0.011 0.063 POU1F1  
V.STAT_Q6 0.011 0.063 STAT [72]
V.GEN_INI3_B 0.013 0.063 GEN_INI  
V.GEN_INI_B 0.012 0.063 GEN_INI  
V.CEBP_Q3 0.013 0.064 C/EBP  
V.GEN_INI2_B 0.015 0.069 GEN_INI  
V.TTF1_Q6 0.016 0.073 TTF-1  
V.OCT_Q6 0.017 0.074 Oct  
V.HMGIY_Q3 0.018 0.074 HMG IY [73]
V.CAP_01 0.019 0.077 cap  
V.MYOD_Q6 0.020 0.078 MyoD  
V.FAC1_01 0.020 0.078 FALZ  
V.E2A_Q2 0.021 0.078 E2A [74]
V.GATA1_02 0.022 0.081 GATA-1 [40]
V.E2A_Q6 0.023 0.081 E2A [74]
V.HMGIY_Q6 0.026 0.088 HMG IY [73]
V.IRF1_Q6 0.027 0.090 IRF  
V.FOXD3_01 0.030 0.094 FOXD3  
V.HNF3ALPHA_Q6 0.030 0.094 HNF-3alpha  
V.E47_01 0.032 0.096 E47  
V.BARBIE_01 0.032 0.096 Barbie box  
V.HNF3B_01 0.033 0.097 HNF-3beta  
V.HOXA3_01 0.034 0.097 HOXA3  
V.HNF3_Q6 0.038 0.101 HNF-3  
V.STAT4_01 0.040 0.102 STAT4  
  1. Transcription factors for which common TFBS associations are found in the promoters of down-regulated E2F target genes are indicated in bold. Results are sorted by Q-value.
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Genome Biology

ISSN: 1474-760X

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