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Table 2 Ranks of adjacent nucleotide proportions of candidate SNPs in D. Rerio

From: A major zebrafish polymorphism resource for genetic mapping

  Observed proportion Proportion bias
SNP type -1 +1 -1 +1
All T » A » C > G* A » T » G > C T > C > a ≈ g A > G > t ≈ c
Transition T » A » C > G A » T » G > C T > C > g > a A ≈ G > c > t
Transversion T > A » C > G A > T » G > C T > A > c > g A > T > g > c
A/G T » A » C » G A » T » G > C C > T » g > a A > G > c > t
C/T T » A » C > G A » T > G » C T > C > g > a G > A » c > t
A/C A » T » C » G A » T » C » G A > C » t ≈ g A » C » g > t
G/T T » A » G » C T » A » G » C T » G » c > a T > G » a > c
A/T T > A » C » G A > T » G » C T > A > c » g A > T > g » c
C/G T > A » G » C A > T » C » G G > T > A » c C > A > T » g
  1. *» denotes greater than 5% difference between two nucleotide proportions, > 1%-5% difference, and ≈ less than 1% difference. A lower-case letter denotes a negative bias of the observed nucleotide proportion compared with the genome average.