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Table 2 Over-represented TFBSs around the over-expressed promoter in Hepa1-6 compared with liver

From: CAGE-TSSchip: promoter-based expression profiling using the 5'-leading label of capped transcripts

TRANSFAC matrixID |Log10(Hepa1-6/liver)| > 0.5 P valuea Binding factors
  Hepa1-6 > liver Liver > Hepa1-6   
  Number of probes % Number of probes %   
V$E2F1_Q3 87 74.4% 16 34.0% 2.31 × e-06 E2f1
V$SP1_01 73 62.4% 11 23.4% 6.04 × e-06 Sp1
V$ETF_Q6 62 53.0% 9 19.1% 9.96 × e-05 ETF b
V$ZF5_01 77 65.8% 16 34.0% 2.50 × e-04 Zfp161
V$CHCH_01 81 69.2% 18 38.3% 3.72 × e-04 Churc1
Total 117   47    
  1. aStatistical significance of the over-representation of each transcription-factor binding site (TFBS) around the over-expressed promoter in Hepa1-6 compared with liver, determined using Fisher's exact probability test. bAlthough TRANSFAC indicated that EGFR-specific transcription factor (ETF) binds to V$ETF_Q6 matrix, there was no report of this interaction in the mouse ortholog.