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Table 7 Effect of filter threshold setting on best match lineages for T. maritime

From: DarkHorse: a method for genome-wide prediction of horizontal gene transfer

 

Filter threshold setting

 

0%

2%

5%

10%

20%

40%

Clostridia

627

695

799

917

1,064

1,170

Other Firmicutes

135

115

99

79

55

56

Non-Firmicutes bacteria

458

422

364

300

229

170

Archaea

208

197

172

139

89

46

Eukaryotes

12

11

7

6

5

1

Total matches

1,440

1,440

1,441

1,441

1,442

1,443

  1. Some columns have slightly lower total numbers due to matches with uncultured organisms, which contain no lineage information but were not filtered out in this experiment.
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Genome Biology

ISSN: 1474-760X

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