Table 2 Effect of filter threshold setting and LPI score ranking on eukaryotic BLAST matches to E. coli
From: DarkHorse: a method for genome-wide prediction of horizontal gene transfer
Filter threshold | Query id | Match id | LPI | Percent identity | Query length | Align length | e-value | Bit score | Match species | Query annotation | Match annotation |
|---|---|---|---|---|---|---|---|---|---|---|---|
0.0 | AAC74689 | CAC43289 | 0.009 | 99 | 603 | 603 | 0 | 1261 | Arabidopsis thaliana | Beta-glucuronidase | Beta-glucuronidase |
0.02 | AAC74689 | ZP_00698534 | 0.981 | 99 | 603 | 603 | 0 | 1255 | Shigella boydii | Â | Beta-galactosidase/beta-glucuronidase |
0.0 | AAC76624 | AAM52982 | 0.009 | 99 | 382 | 382 | 0 | 741 | Dunaliella bardawil | Mannitol-1-phosphate dehydrogenase | Mannitol-1-phosphate dehydrogenase |
0.02 | AAC76624 | AAN45081.2 | 0.981 | 98 | 382 | 382 | 0 | 738 | Shigella flexneri | Â | Mannitol-1-phosphate dehydrogenase |
0.0 | AAC73440 | AAU04862 | 0.001 | 96 | 427 | 425 | 0 | 830 | Tamarix chinensis | Cytosine deaminase | Cytosine deaminase |
0.2 | AAC73440 | AAV79026 | 0.925 | 81 | 427 | 420 | 0 | 706 | Salmonella enterica | Â | Cytosine deaminase |
0.0 | AAC73353 | AAA35359 | 0.088 | 78 | 155 | 99 | 7.0E-42 | 171 | Cercopithecus aethiops | CP4-6 prophage | None |
0.2 | AAC73353 | ZP_00825492 | 0.924 | 48 | 155 | 145 | 1.0E-36 | 153 | Yersinia mollaretii | Â | Hypothetical protein |
0.0 | AAC75891 | gi|2143952 | 0.108 | 85 | 458 | 441 | 0 | 719 | Rattus norvegicus | Predicted transcriptional regulator | Hepatic glutathione transporter |
0.8 | AAC75891 | AAD12579 | 0.927 | 28 | 458 | 403 | 1.0E-38 | 164 | Salmonella typhimurium | Â | HilA |
0.0 | AAC73796 | BAB33410 | 0.029 | 100 | 108 | 108 | 1.0E-54 | 213 | Pisum sativum | Predicted inner membrane protein | Putative senescence-associated protein |
0.0 | AAC74583 | BAE25662 | 0.104 | 92 | 1325 | 895 | 0 | 1614 | Musmusculus | Predicted lipoprotein | none |
0.0 | ABD18679 | gi|1095170 | 0.108 | 93 | 234 | 179 | 3.0E-86 | 320 | Rattus norvegicus | Predicted protein, amino terminal fragment (pseudogene) | Glutathione transporter |