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Table 3 Percentage of synchronously peaking genes in the Thy-Noc dataset

From: A new computational approach to analyze human protein complexes and predict novel protein interactions

  Peaks of expression (% of peaking genes per complex)
Protein complex 2 h-0 h 4 h-2 h 6 h-4 h 8 h-6 h 10 h-8 h 12 h-10 h 14 h-12 h
AP2 50 25 25 0 25 25 50
ARC 80 0 0 80 0 60 0
Arp2-3 0 60 40 0 20 0 40
ATP_F0 0 10 10 20 10 0 80
ATP_F1 0 33 0 33 0 0 33
APC 50 25 25 38 13 13 63
COX 0 25 38 0 25 0 50
Centrosome 27 22 14 20 24 31 39
Dynactin 14 0 14 14 14 14 71
Exocyst 29 43 29 57 14 43 43
Exosome 20 20 40 0 0 0 60
FA 34 28 34 30 9 30 40
GTC 33 17 33 17 33 33 33
LRS 6 22 6 6 6 0 72
MLRS 22 27 24 22 27 11 62
MSRS 20 37 33 20 7 10 63
Nucleopore 37 33 37 13 3 27 60
Nucleosome 13 54 13 25 8 8 38
ORC 50 17 17 50 17 33 0
PD 29 14 57 29 14 29 29
Proteasome 30 9 30 9 13 0 87
RFC 50 0 50 50 50 25 0
RNA Pol II 30 30 70 0 0 0 40
RNA Pol III 20 0 40 40 0 60 20
SNARE 14 57 29 14 29 29 14
SWI-SNF 33 17 33 8 0 17 42
SRP 75 25 25 0 0 25 75
SCF 33 33 33 0 33 0 100
SRS 10 40 35 10 15 5 60
TAFIID 23 38 8 23 23 0 46
TRAPP 33 17 0 17 17 0 50
VHL 0 0 50 0 0 0 50
  1. For each protein complex the percentage of its synchronously peaking genes in each time interval is reported. AP2, adaptor-related protein complex 2; APC, anaphase promoting complex; ARC, axin related complex; ATP_F0, ATP synthase, H+ transporting, mitochondrial F0 complex; ATP_F1, ATP synthase, H+ transporting, mitochondrial F1 complex; COX, cytochrome c oxidase; FA, focal adhesion; GTC, golgi transport complex; MSRS, mitochondrial small ribosomal subunit; ORC, origin recognition complex; PD, pyruvate dehydrogenase; RNA Pol II, RNA polymerase II; SRP, signal recognition particle; TRAPP, trafficking protein particle complex; VHL, von Hippel-Lindau complex.