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Table 1 Set of known human multi-protein complexes analyzed

From: A new computational approach to analyze human protein complexes and predict novel protein interactions

   Number of genes
Protein complex Complex type Thy-Thy2 Thy-Thy3 Thy-Noc
ATP_F0 Permanent 7 10 10
ATP_F1 Permanent 4 3 3
COX Permanent 7 6 8
SRS Permanent 16 20 20
LRS Permanent 15 18 18
MLRS Permanent 22 36 37
MSRS Permanent 20 30 30
Proteasome Permanent 21 21 23
PD Permanent 6 7 7
RNA Pol II Permanent 10 10 10
RNA Pol III Permanent 4 6 5
AP2 Transient 2 4 4
APC Transient 5 8 8
Arp2-3 Transient 6 3 5
ARC Transient 4 5 5
Centrosome Transient 42 50 51
Dynactin Transient 7 9 7
Exocyst Transient 7 7 7
Exosome Transient 3 5 5
FA Transient 37 46 47
GTC Transient 5 6 6
Nucleopore Transient 27 29 30
Nucleosome Transient 17 24 24
ORC Transient 4 5 6
RFC Transient 3 4 4
SRP Transient 3 5 4
SCF Transient 3 3 3
SNARE complex Transient 7 7 7
SWI-SNF Transient 12 10 12
TAFIID Transient 8 13 13
TRAPP Transient 2 5 6
VHL Transient 4 4 4
  1. The number of genes representing each protein complex is reported for the three analyzed HeLa cell-cycle datasets. AP2, adaptor-related protein complex 2; APC, anaphase promoting complex; ARC, axin related complex; ATP_F0, ATP synthase, H+ transporting, mitochondrial F0 complex; ATP_F1, ATP synthase, H+ transporting, mitochondrial F1 complex; COX, cytochrome c oxidase; FA, focal adhesion; GTC, golgi transport complex; MSRS, mitochondrial small ribosomal subunit; ORC, origin recognition complex; PD, pyruvate dehydrogenase; RNA Pol II, RNA polymerase II; SRP, signal recognition particle; TRAPP, trafficking protein particle complex; VHL, von Hippel-Lindau complex.