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Table 4 Estimated parameter values for the exponential model of RTR and InDel rate

From: Phylogenetic simulation of promoter evolution: estimation and modeling of binding site turnover events and assessment of their impact on alignment tools

 

Model for mean

Model for median

TFBS name

a

b

a

b

E2F

-0.216

0.226

-0.181

0.184

Myc

-0.252

0.252

-0.265

0.265

NFκB

-0.072

0.072

-0.035

0.035

  1. Simulation results suggested that the TFBS RTR can be modeled by an exponential function of InDel rates given in equation 5. The values for parameters a and b were estimated from observed mean and median values of RTRs at different InDel rates.
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Genome Biology

ISSN: 1474-760X

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