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Table 6 The variable genomic regions in strain 8004

From: Comparative and functional genomics reveals genetic diversity and determinants of host specificity among reference strains and a large collection of Chinese isolates of the phytopathogen Xanthomonas campestris pv. campestris

XVR Chromosomal coordinates CDSs Length GC δ* value (×1,000)
XVR01 76036-80668 XC0061-XC0065 (5) 4,633 54.31 98.553
XVR02 159333-170981 XC0128-XC0136 (8) 11,649 57.19 62.146
XVR03 269007-274301 XC0223-XC0225 (3) 5,295 57.89 51.416
XVR04 402049-414813 XC0341-XC0355 (15) 12,765 56.94 103.820
XVR05 562624-571104 XC0475-XC0480 (6) 8,481 55.55 101.685
XVR06 705062-714579 XC0589-XC0596 (8) 9,518 59.74 57.941
XVR07 1035995-1049889 XC0856-XC0871 (15) 13,895 57.67 56.843
XVR08 1095226-1097524 XC0914-XC0916 (3) 2,299 67.76 100.000
XVR09 1231170-1259018 XC1018-XC1042 (22) 27,849 55.22 91.389
XVR10 1270957-1275001 XC1055-XC1059 (5) 4,045 55.16 100.665
XVR11 1940629-1952343 XC1619-XC1626 (8) 11,715 56.06 80.616
XVR12 1958257-1968956 XC1631-XC1641 (11) 10,700 54.1 72.784
XVR13 2414668-2513025 XC2002-XC2089 (81) 98,358 60.51 77.060
XVR13.1 2432933-2490940 XC2020-XC2074 (53) 58,007 62.23 63.589
XVR14 2531325-2543429 XC2106-XC2126 (21) 12,105 60.05 46.543
XVR15 2545133-2569438 XC2128-XC2140 (13) 24,305 63.27 31.640
XVR16 2713064-2720842 XC2254-XC2258 (5) 7,779 64.51 55.837
XVR17 2759130-2764563 XC2292-XC2295 (4) 5,434 59.26 65.992
XVR18 2899536-2958586 XC2399-XC2444 (47) 59,051 55.38 109.955
XVR19 3122997-3176917 XC2590-XC2638 (49) 53,921 58.17 113.835
XVR20 3332308-3356903 XC2774-XC2790 (17) 24,596 58.49 83.425
XVR21 3620451-3629704 XC3026-XC3034 (9) 9,254 61.49 40.074
XVR22 3809655-3818302 XC3180-XC3184 (5) 8,648 58.43 85.752
XVR23 4299842-4315783 XC3619-XC3633 (14) 15,942 56.82 81.182
XVR24 4382229-4384007 XC3695-XC3697 (3) 1,778 49.59 108.993
XVR25 4492839-4498618 XC3799-XC3804 (6) 5,780 57.77 73.882
XVR26 4614209-4631109 XC3908-XC3924 (16) 16,901 58.23 52.313
XVR27 5009127-5011690 XC4232-XC4234 (3) 2,564 55.97 104.713
  1. These variable genomic regions (XVRs) are totally absent from the genome of Chinese strains. XVR13.1 denotes that the fragment is a part of XVR13.