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Table 1 MicroRNA/proximal probe correlations

From: MicroRNA expression profiling of human breast cancer identifies new markers of tumor subtype

  

Host gene

Proximal probe

miRNA

Chromosome position

Name

Pearson correlation

Name†

Pearson correlation

miRNA/probe distance (kb)

miR-101

1p31.1

  

FLJ26232

0.4337

35.99

miR-30e-5p

1p34.2

NFYC

0.4950

  

17.02

miR-181a

1q31.3

  

Hs.497310

0.4106

19.61

miR-205

1q32.2

  

NPC-A-5

0.7936

0.00

miR-10b

2q31.1

  

HOXD10

0.4902

30.96

    

HOXD8

0.4472

18.53

miR-149

2q37.3

GPC1

0.6567

  

11.68

miR-30a-3p

6q13

  

BC040204

0.6406

16.17

miR-30a-5p

6q13

  

BC040204

0.7091

16.17

    

C6orf155

0.4995

11.12

miR-30c

6q13

  

BC040204

0.4566

10.30

miR-106b

7q22.1

MCM7

0.5157

  

1.02

miR-25

7q22.1

MCM7

0.4939

  

0.59

miR-93

7q22.1

MCM7

0.4988

  

0.79

miR-181a

9q33.3

NR6A1 ‡

 

R08260

0.5913

1.51

miR-181b

9q33.3

NR6A1 ‡

 

R08260

0.5634

2.78

miR-196a

12q13.13

  

HOXC10

0.4914

1.75

miR-342

14q32.2

EVL

0.7208

  

34.26

miR-10a

17q21.32

  

GI_30159691

0.8123

0.40

    

HOXB6

0.8085

16.10

    

HOXB5

0.7150

11.48

    

HOXB3

0.6908

29.79

    

HOXB2

0.7019

36.74

    

HOXB4

0.6856

2.90

    

HOXB8

0.5937

32.43

miR-199a*

19p13.2

DNM2 ‡

 

TMED1

0.4111

15.22

miR-99a

21q21.1

C21orf34

0.4766

  

67.87

miR-155

21q21.3

  

BIC

0.4688

0.73

let-7a

22q13.31

  

FLJ27365

0.5272

1.45

let-7b

22q13.31

  

FLJ27365

0.5732

2.38

  1. †Gene symbol, accession number or Illumina probe identifier. ‡Gene lies on the opposite strand.
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Genome Biology

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