Table 2 The 40 most abundant H. glycines transcripts
Contig | EST | Contig length | E-value* | Identity (%) | Description |
|---|---|---|---|---|---|
HgAffx.13905.2 | 599 | 846 | 4.4e-36 | 89.3 | emb|CAB88203.1| Putative cuticular collagen [Globodera pallida] |
HgAffx.18740.1 | 351 | 1,386†| 3.5e-201 | 100 | gb|AAN15196.1| Actin [Globodera rostochiensis] |
HgAffx.13471.1 | 232 | 1,290†| 4.3e-190 | 98.6 | gb|AAO49799.1| Arginine kinase [Heterodera glycines] |
HgAffx.7395.1 | 91 | 1,538 | 2.8e-202 | 100 | gb|AAT70232.1| unc-87 [H. glycines] |
HgAffx.3699.1 | 86 | 695†| 1.4e-60 | 100 | gb|AAO33474.1| Gland-specific protein g4g12 [H. glycines] |
HgAffx.24400.1 | 81 | 756 | Â | Â | Novel |
HgAffx.22869.1 | 78 | 1,315 | 1.8e-177 | 82 | sp|P49149| 60S ribosomal protein L3 [Toxocara canis] |
HgAffx.13905.1 | 68 | 1,199 | 3.9e-25 | 43 | emb|CAE70235.1| Hypothetical protein CBG16724 [Caenorhabditis briggsae] |
HgAffx.11519.1 | 66 | 1,937 | 9.6e-24 | 75.3 | ref|XP_453836.1| Unnamed protein product [Kluyveromyces lactis] |
HgAffx.15767.1 | 64 | 1,242 | 3.0e-88 | 68.7 | emb|CAC33829.1| Annexin 2 [G. pallida] |
HgAffx.17330.1 | 61 | 486 | Â | Â | Novel |
HgAffx.13471.2 | 57 | 1,237 | 8.4e-128 | 82.3 | gb|AAB38001.1| Hypothetical protein T01B11.4 [Caenorhabditis elegans] |
HgAffx.20336.3 | 55 | 2,138 | 4.0e-66 | 45.1 | dbj|BAB33421.1| Putative senescence-associated protein [Pisum sativum] |
HgAffx.22036.1 | 54 | 1,087 | 2.8e-94 | 78.2 | gb|AAF99870.1| Ribosomal small subunit protein 3 [C. elegans] |
HgAffx.19294.1 | 53 | 672 | 4.2e-27 | 46.7 | gb|AAK21484.1| Lipid binding protein 6 [C. elegans] |
HgAffx.10986.1 | 51 | 1,311 | 4.5e-151 | 94.1 | gb|AAC79129.1| Glyceraldehyde-3-phosphate-dehydrogenase [G. rostochiensis] |
HgAffx.13471.3 | 48 | 2,514 | Â | Â | Novel |
HgAffx.20065.1 | 48 | 2,092†| 0 | 95.6 | gb|AAG47839.1| Heatshock protein 70 [H. glycines] |
HgAffx.16311.1 | 47 | 2,368 | 2.3e-37 | 26.3 | sp|Q94637| Vitellogenin 6 precursor [Oscheius brevis] |
HgAffx.22005.5 | 44 | 615 | 2.0e-20 | 57.4 | gb|AAL78212.1| Putative gland cell secretory protein Hgg-25 [H. glycines] |
HgAffx.22952.1 | 44 | 565 | 2.9e-53 | 79 | gb|AAT92172.1| Ribosomal protein S14 [Ixodes pacificus] |
HgAffx.20012.1 | 44 | 486 | Â | Â | Novel |
HgAffx.16586.1 | 39 | 481 | Â | Â | Novel |
HgAffx.24042.1 | 38 | 474 | 3.1e-47 | 90.5 | emb|CAA90434.1| Hypothetical protein C09H10.2 [C. elegans] |
HgAffx.24357.1 | 37 | 479 | 4.1e-24 | 66.2 | emb|CAE71709.1| Hypothetical protein CBG18686 [C. briggsae] |
HgAffx.20747.1 | 37 | 1,145†| 9.8e-88 | 72.4 | gb|AAQ12016.1| Tropomyosin [H. glycines] |
HgAffx.8887.1 | 36 | 788 | 5.9e-76 | 67.4 | emb|CAE71139.1| Hypothetical protein CBG17994 [C. briggsae] |
HgAffx.21332.1 | 36 | 2,325 | 0 | 91 | gb|AAO14563.2| Heatshock protein 90 [H. glycines] |
HgAffx.18233.1 | 35 | 913 | 5.5e-69 | 83.6 | gb|AAL40718.1| Myosin regulatory light chain [Meloidogyne incognita] |
HgAffx.23479.1 | 33 | 595 | 7.2e-39 | 73.1 | gb|AAF08341.1| Peptidyl-prolyl cis-trans isomerase [Brugia malayi] |
HgAffx.13457.1 | 33 | 783 | 4.6e-67 | 70.5 | emb|CAE58579.1| Hypothetical protein CBG01745 [C. briggsae] |
HgAffx.15145.1 | 33 | 2,162 | 4.5e-153 | 62.5 | emb|CAA90444.1| Hypothetical protein F18H3.3a [C. elegans] |
HgAffx.24295.1 | 33 | 1,043 | 4.7e-44 | 80.9 | sp|P92504| Cytochrome c type-1 [Ascaris suum] |
HgAffx.20336.1 | 32 | 1,225†| 3.2e-157 | 92.7 | gb|AAC48326.1| Beta-1,4-endoglucanase-2 precursor [H. glycines] |
HgAffx.14833.1 | 31 | 1,440 | 3.0e-84 | 74 | emb|CAA51679.1| Ubiquitin [Lycopersicon esculentum] |
HgAffx.19292.1 | 30 | 749 | 7.9e-52 | 64.5 | emb|CAE70207.1| Hypothetical protein CBG16683 [C. briggsae] |
HgAffx.10017.1 | 30 | 846 | 1.0e-38 | 89.1 | emb|CAB88203.1| Putative cuticular collagen [G. pallida] |
HgAffx.19634.1 | 29 | 782 | 6.8e-61 | Â | emb|CAE64949.1| Hypothetical protein CBG09780 [C. briggsae] |
HgAffx.24169.1 | 29 | 623 | Â | Â | Novel |
HgAffx.22005.1 | 28 | 765†| 3.9e-114 | 90.7 | gb|AAP30835.1| Putative gland protein G33E05 [H. glycines] |