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Table 3 Aligned fraction of the ENCODE regions

From: Using several pair-wise informant sequences for de novo prediction of alternatively spliced transcripts

 

Mouse

Rat

Dog

Chicken

Frog

Opossum

Whole regions

15.2%

14.7%

28.8%

2.8%

2.0%

5.6%

Coding sequence

87.5%

85.0%

87.4%

53.0%

50.1%

76.1%

  1. A comparison of the total fraction of bases aligned in the 44 ENCODE regions and the fraction of bases aligned in the coding portion of the GENCODE annotation for each of the informant sources in the MARS informant set. See Materials and methods for the alignment protocol.
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Genome Biology

ISSN: 1474-760X

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