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Table 3 CRE sites present near a set of brain-related miRNAs in the human genome

From: Comparative sequence analysis reveals an intricate network among REST, CREBand miRNA in mediating neuronal gene expression

 

Conserved CRE site*

Conserved CRE half site†

miRNA

Position‡

Distance (bp)

Position‡

Distance (bp)

mir-124a-1

  

chr8:9801040-9801044

-2648

mir-124a-2

chr8:65452347-65452354

-1913

  

mir-124a-3

chr20:61279330-61279337

-968

chr20:61232305-61232309

-47992

   

chr20:61276720-61276724

-3577

   

chr20:61317969-61317973

37665

mir-9-1

chr1:153204718-153204725

-1423

chr1:153212345-153212349

-9051

mir-9-2

chr5:88007547-88007554

-9034

chr5:88016703-88016707

-18190

   

chr5:87995510-87995514

3003

mir-9-3

chr15:87706692-87706699

-5565

chr15:87712302-87712306

50

 

chr15:87711861-87711868

-391

chr15:87740065-87740069

27813

 

chr15:87743860-87743867

31604

chr15:87757417-87757421

45165

   

chr15:87757437-87757441

45185

mir-132/212

chr17:1901302-1901309

-1247

chr17:1922008-1922012

-21956

 

chr17:1900538-1900545

-486

chr17:1921968-1921972

-21916

 

chr17:1900522-1900529

-470

chr17:1913396-1913400

-13344

 

chr17:1900084-1900091

-35

  

mir-135a-2

  

chr12:96426695-96426699

-33363

mir-153-1

chr2:219999719-219999726

-15292

chr2:219969610-219969614

14817

 

chr2:219939817-219939824

44611

chr2:219969479-219969483

14948

   

chr2:219964362-219964366

20065

mir-29a/29b-1

chr7:130063683-130063690

-44859

  

mir-29b-2

  

chr1:204385822-204385826

-21559

   

chr1:204384854-204384858

-20591

mir-139

  

chr11:72021296-72021300

-17474

  1. *CRE (cAMP response element); site: TGACGTCA. †CRE half site: TGACG; can bind to CREB with weaker affinity. ‡Position is referenced on hg17. Only sites perfectly conserved in human, mouse, rat and dog are shown.