Table 4 Codon usage of translations by nematode species
From: Codon usage patterns in Nematoda: analysis based on over 25 million codons in thirty-two species
| Â | Â | Â | Species (codons [n]) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
AA | Â | Codon | NA (192,756) | AC (305,036) | AY (387,372) | NB (75,934) | HC (584,513) | OO (222,616) | TD (194,351) | CE (9,784,215) | CB (8,007,053) | PP (297,605) | SS (367,308) | SR (320,875) | PT (284,785) | PE (45,802) | GP (65,699) | GR (290,614) |
A | Ala | GCA | 28.8 | 25.0 | 23.9 | 19.7 | 26.0 | 24.9 | 25.4 | 31.5 | 26.1 | 20.7 | 33.2 | 31.4 | 24.2 | 31.4 | 20.4 | 22.1 |
A | Ala | GCC | 18.5 | 23.0 | 24.2 | 30.0 | 22.8 | 23.4 | 24.0 | 19.9 | 22.7 | 32.4 | 9.1 | 9.7 | 23.4 | 29.5 | 31.9 | 32.6 |
A | Ala | GCG | 16.0 | 17.7 | 17.3 | 17.6 | 13.6 | 16.3 | 16.6 | 13.1 | 15.2 | 16.7 | 2.0 | 1.6 | 7.1 | 13.2 | 26.7 | 27.3 |
A | Ala | GCT | 36.7 | 34.2 | 34.6 | 32.7 | 37.6 | 35.4 | 34.0 | 35.5 | 35.9 | 30.2 | 55.7 | 57.4 | 45.3 | 25.9 | 20.9 | 18.1 |
Codons per AA | 13,237 | 21,208 | 29,600 | 5,916 | 43,104 | 16,126 | 14,513 | 618,499 | 502,187 | 22,118 | 20,285 | 17,201 | 17,930 | 3,173 | 4,494 | 21,522 | ||
C | Cys | TGT | 54.0 | 46.9 | 44.4 | 39.5 | 46.7 | 49.0 | 44.3 | 55.3 | 56.9 | 39.2 | 84.4 | 85.3 | 63.9 | 42.6 | 42.1 | 43.7 |
C | Cys | TGC | 46.0 | 53.1 | 55.6 | 60.5 | 53.3 | 51.0 | 55.7 | 44.7 | 43.1 | 60.8 | 15.6 | 14.7 | 36.1 | 57.4 | 57.9 | 56.3 |
Codons per AA | 4,538 | 7,295 | 8,510 | 1,702 | 13,213 | 5,109 | 5,154 | 196,660 | 159,737 | 5,789 | 6,996 | 6,285 | 5,682 | 925 | 1,584 | 6,219 | ||
D | Asp | GAC | 40.5 | 46.8 | 47.4 | 48.5 | 40.8 | 45.1 | 45.4 | 32.4 | 35.6 | 43.0 | 13.5 | 12.7 | 29.1 | 39.1 | 61.8 | 63.8 |
D | Asp | GAT | 59.5 | 53.2 | 52.6 | 51.5 | 59.2 | 54.9 | 54.6 | 67.6 | 64.4 | 57.0 | 86.5 | 87.3 | 70.9 | 60.9 | 38.2 | 36.2 |
Codons per AA | 9,934 | 15,229 | 21,124 | 4,117 | 32,318 | 11,797 | 10,014 | 520,465 | 423,125 | 16,048 | 20,825 | 17476 | 15,182 | 2,448 | 2,930 | 14,122 | ||
E | Glu | GAA | 58.8 | 52.0 | 49.5 | 46.3 | 57.9 | 56.8 | 55.3 | 62.5 | 59.1 | 37.7 | 80.4 | 84.6 | 65.3 | 60.4 | 50.2 | 49.7 |
E | Glu | GAG | 41.2 | 48.0 | 50.5 | 53.7 | 42.1 | 43.2 | 44.7 | 37.5 | 40.9 | 62.3 | 19.6 | 15.4 | 34.7 | 39.6 | 49.8 | 50.3 |
Codons per AA | 11,865 | 18,355 | 25,474 | 4,774 | 38,175 | 14,008 | 11,873 | 638,649 | 543,774 | 20,537 | 25,838 | 20,812 | 18,057 | 3,075 | 3,570 | 17,574 | ||
F | Phe | TTC | 56.4 | 61.0 | 67.7 | 72.3 | 63.7 | 63.5 | 63.9 | 50.5 | 58.6 | 81.9 | 17.8 | 17.7 | 41.5 | 52.8 | 43.3 | 50.0 |
F | Phe | TTT | 43.6 | 39.0 | 32.3 | 27.7 | 36.3 | 36.5 | 36.1 | 49.5 | 41.4 | 18.1 | 82.2 | 82.3 | 58.5 | 47.2 | 56.7 | 50.0 |
Codons per AA | 8,977 | 14,376 | 16,102 | 3,031 | 24,881 | 9,726 | 8,311 | 464,354 | 373,697 | 12,020 | 15,752 | 15,138 | 13,032 | 1,966 | 3,650 | 14,036 | ||
G | Gly | GGA | 42.7 | 39.5 | 39.7 | 41.4 | 40.4 | 40.0 | 40.9 | 58.7 | 60.7 | 55.6 | 50.1 | 51.2 | 52.3 | 35.1 | 26.9 | 24.8 |
G | Gly | GGC | 17.8 | 23.3 | 23.5 | 24.1 | 20.9 | 22.5 | 22.5 | 12.5 | 12.1 | 20.6 | 4.3 | 3.1 | 10.5 | 29.7 | 34.9 | 41.8 |
G | Gly | GGG | 10.1 | 10.0 | 9.5 | 5.9 | 9.7 | 8.8 | 8.4 | 8.3 | 8.4 | 6.9 | 5.9 | 3.9 | 6.8 | 11.7 | 20.6 | 17.5 |
G | Gly | GGT | 29.4 | 27.2 | 27.3 | 28.6 | 29.0 | 28.8 | 28.2 | 20.5 | 18.8 | 16.9 | 39.8 | 41.8 | 30.4 | 23.5 | 17.6 | 15.9 |
Codons per AA | 12,228 | 18,073 | 25,292 | 5,264 | 38,407 | 14,914 | 13,068 | 524,163 | 433,832 | 19,759 | 22,207 | 18,910 | 18,057 | 3,189 | 4,741 | 18,802 | ||
H | His | CAC | 43.1 | 48.8 | 51.9 | 55.5 | 43.5 | 46.8 | 45.9 | 39.5 | 39.7 | 53.5 | 15.7 | 16.2 | 35.7 | 37.2 | 50.5 | 52.6 |
H | His | CAT | 56.9 | 51.2 | 48.1 | 44.5 | 56.5 | 53.2 | 54.1 | 60.5 | 60.3 | 46.5 | 84.3 | 83.8 | 64.3 | 62.8 | 49.5 | 47.4 |
Codons per AA | 4,853 | 8,224 | 9,726 | 1,835 | 14,460 | 5,779 | 4,965 | 226,949 | 183,283 | 7,363 | 7,664 | 6,679 | 6,789 | 1,086 | 1,589 | 7,500 | ||
I | Ile | ATA | 21.9 | 20.1 | 16.9 | 14.4 | 19.6 | 19.5 | 18.5 | 15.6 | 13.4 | 10.5 | 30.2 | 30.3 | 24.3 | 16.0 | 15.0 | 11.5 |
I | Ile | ATC | 35.1 | 41.2 | 46.0 | 49.6 | 39.9 | 41.4 | 42.2 | 31.2 | 39.2 | 57.4 | 9.1 | 9.2 | 27.0 | 33.1 | 36.9 | 37.1 |
I | Ile | ATT | 43.0 | 38.7 | 37.2 | 36.0 | 40.5 | 39.2 | 39.3 | 53.3 | 47.4 | 32.2 | 60.7 | 60.6 | 48.7 | 50.9 | 48.1 | 51.4 |
Codons per AA | 10,621 | 17,171 | 20,026 | 3,808 | 31,585 | 11,807 | 9,787 | 596,151 | 477,819 | 15,856 | 26,077 | 23,850 | 18,935 | 2,659 | 3,216 | 15,144 | ||
K | Lys | AAA | 50.2 | 44.1 | 39.5 | 36.1 | 47.5 | 48.5 | 45.0 | 59.3 | 57.9 | 24.2 | 80.4 | 82.4 | 56.7 | 55.5 | 58.9 | 53.3 |
K | Lys | AAG | 49.8 | 55.9 | 60.5 | 63.9 | 52.5 | 51.5 | 55.0 | 40.7 | 42.1 | 75.8 | 19.6 | 17.6 | 43.3 | 44.5 | 41.1 | 46.7 |
Codons per AA | 12,606 | 19,080 | 24,922 | 5,451 | 41,187 | 14,926 | 12,874 | 622,428 | 511,710 | 19,693 | 29,246 | 25,932 | 23,023 | 3,465 | 4,650 | 17,224 | ||
L | Leu | CTA | 11.8 | 10.7 | 9.7 | 9.0 | 10.2 | 10.9 | 9.8 | 9.2 | 9.9 | 7.3 | 6.2 | 5.5 | 5.5 | 7.4 | 4.4 | 3.6 |
L | Leu | CTC | 17.2 | 19.5 | 21.1 | 22.8 | 18.6 | 20.0 | 20.7 | 17.3 | 18.8 | 36.9 | 3.4 | 3.5 | 15.2 | 15.0 | 18.4 | 16.0 |
L | Leu | CTG | 16.1 | 21.6 | 23.5 | 24.6 | 18.8 | 19.5 | 20.5 | 14.1 | 16.0 | 20.1 | 1.7 | 1.5 | 9.3 | 17.4 | 21.8 | 25.2 |
L | Leu | CTT | 23.1 | 19.6 | 20.2 | 18.9 | 22.7 | 21.2 | 21.8 | 24.6 | 21.1 | 18.4 | 30.9 | 30.5 | 24.8 | 20.6 | 19.3 | 17.4 |
L | Leu | TTA | 12.5 | 9.6 | 7.2 | 6.2 | 9.9 | 8.8 | 7.7 | 11.4 | 9.0 | 4.8 | 45.8 | 46.6 | 29.4 | 11.3 | 8.6 | 6.1 |
L | Leu | TTG | 19.3 | 19.0 | 18.3 | 18.4 | 19.9 | 19.7 | 19.5 | 23.3 | 25.2 | 12.5 | 12.0 | 12.3 | 15.8 | 28.3 | 27.5 | 31.7 |
Codons per AA | 16,664 | 27,074 | 32,761 | 6,176 | 49,075 | 18,693 | 16,399 | 841,631 | 680,113 | 25,061 | 30,422 | 27,556 | 23,764 | 3,828 | 6,003 | 27,096 | ||
M | Met | ATG | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 |
Codons per AA | 5,102 | 8,525 | 9,696 | 1,943 | 14,531 | 5,794 | 5,165 | 255,677 | 209,897 | 7,598 | 8,490 | 7,569 | 6,725 | 1,189 | 1,489 | 7,131 | ||
N | Asn | AAC | 48.0 | 52.3 | 53.9 | 58.0 | 46.9 | 48.9 | 50.7 | 37.8 | 42.2 | 49.7 | 13.3 | 13.7 | 31.5 | 35.9 | 53.0 | 53.7 |
N | Asn | AAT | 52.0 | 47.7 | 46.1 | 42.0 | 53.1 | 51.1 | 49.3 | 62.2 | 57.8 | 50.3 | 86.7 | 86.3 | 68.5 | 64.1 | 47.0 | 46.3 |
Codons per AA | 8,173 | 12,784 | 15,647 | 3,003 | 24,165 | 9,013 | 8,111 | 477,965 | 383,675 | 11,638 | 21,928 | 19,815 | 15,025 | 2,073 | 2,589 | 12,490 | ||
P | Pro | CCA | 35.0 | 35.0 | 33.6 | 31.2 | 34.6 | 35.7 | 35.1 | 52.8 | 53.1 | 15.3 | 66.2 | 66.5 | 48.2 | 44.0 | 20.0 | 22.5 |
P | Pro | CCC | 14.0 | 15.9 | 16.5 | 16.7 | 15.8 | 15.0 | 14.5 | 9.1 | 10.3 | 38.3 | 3.7 | 3.2 | 17.3 | 16.2 | 28.1 | 23.4 |
P | Pro | CCG | 20.0 | 21.8 | 23.1 | 28.4 | 19.5 | 20.9 | 22.0 | 19.8 | 19.1 | 17.7 | 2.4 | 2.1 | 8.5 | 19.9 | 33.0 | 39.1 |
P | Pro | CCT | 31.0 | 27.3 | 26.8 | 23.7 | 30.0 | 28.5 | 28.4 | 18.2 | 17.5 | 28.6 | 27.7 | 28.2 | 26.0 | 19.9 | 18.9 | 15.1 |
Codons per AA | 9,552 | 14,020 | 19,732 | 3,711 | 28,449 | 11,512 | 9,972 | 481,470 | 403,504 | 15,120 | 16,634 | 13,870 | 12,379 | 2,068 | 3,838 | 14,519 | ||
Q | Gln | CAA | 56.3 | 48.9 | 45.4 | 42.6 | 52.6 | 52.7 | 52.3 | 65.6 | 63.3 | 37.3 | 89.1 | 88.4 | 69.6 | 62.9 | 52.8 | 52.7 |
Q | Gln | CAG | 43.7 | 51.1 | 54.6 | 57.4 | 47.4 | 47.3 | 47.7 | 34.4 | 36.7 | 62.7 | 10.9 | 11.6 | 30.4 | 37.1 | 47.2 | 47.3 |
Codons per AA | 7,217 | 11,341 | 14,843 | 2,691 | 21,339 | 8,424 | 7,339 | 405,452 | 332,326 | 10,116 | 13,651 | 11,696 | 10,098 | 2,058 | 2,515 | 12,900 | ||
R | Arg | AGA | 20.8 | 18.7 | 17.1 | 19.3 | 18.6 | 18.4 | 19.8 | 29.4 | 31.8 | 30.6 | 50.6 | 52.2 | 39.1 | 13.9 | 12.8 | 10.7 |
R | Arg | CGA | 23.0 | 21.9 | 21.5 | 20.7 | 21.3 | 23.2 | 21.4 | 22.9 | 22.0 | 16.4 | 6.8 | 6.3 | 8.3 | 20.4 | 14.3 | 17.9 |
R | Arg | AGG | 11.7 | 13.3 | 13.8 | 10.5 | 12.5 | 12.0 | 12.4 | 7.4 | 8.1 | 9.8 | 9.8 | 6.9 | 9.3 | 10.2 | 10.3 | 8.9 |
R | Arg | CGC | 13.9 | 16.3 | 17.3 | 18.2 | 14.0 | 15.0 | 14.7 | 9.9 | 10.0 | 16.2 | 3.3 | 3.5 | 12.3 | 19.9 | 26.3 | 25.1 |
R | Arg | CGG | 8.0 | 9.1 | 8.9 | 7.9 | 8.5 | 9.0 | 8.4 | 8.9 | 8.3 | 5.9 | 1.7 | 1.3 | 3.5 | 10.9 | 17.2 | 17.3 |
R | Arg | CGT | 22.6 | 20.7 | 21.3 | 23.5 | 25.0 | 22.4 | 23.2 | 21.6 | 19.8 | 21.1 | 27.8 | 29.8 | 27.5 | 24.7 | 19.1 | 20.2 |
Codons per AA | 11,856 | 19,042 | 23,683 | 4,857 | 35,121 | 13,588 | 11,363 | 511,021 | 432,791 | 19,008 | 17,062 | 13,744 | 14,051 | 2,840 | 4,378 | 18,826 | ||
S | Ser | AGC | 14.0 | 16.4 | 16.6 | 18.0 | 14.6 | 14.7 | 16.2 | 10.3 | 9.8 | 9.8 | 3.1 | 2.6 | 7.7 | 15.5 | 17.8 | 17.5 |
S | Ser | TCA | 21.3 | 19.6 | 18.1 | 16.4 | 21.1 | 21.4 | 19.7 | 25.5 | 20.4 | 14.8 | 36.6 | 37.6 | 27.8 | 24.1 | 13.5 | 13.8 |
S | Ser | TCC | 13.6 | 15.6 | 16.2 | 16.3 | 14.0 | 14.6 | 14.7 | 13.2 | 16.0 | 20.7 | 5.2 | 4.1 | 13.2 | 16.9 | 20.7 | 21.0 |
S | Ser | AGT | 14.8 | 13.4 | 12.6 | 11.8 | 14.3 | 13.4 | 14.0 | 15.0 | 14.4 | 10.4 | 23.8 | 21.7 | 17.5 | 12.9 | 11.6 | 11.9 |
S | Ser | TCG | 16.6 | 16.8 | 18.6 | 22.2 | 16.9 | 18.2 | 17.6 | 15.1 | 16.7 | 21.4 | 2.2 | 2.0 | 8.0 | 14.3 | 20.3 | 22.7 |
S | Ser | TCT | 19.7 | 18.1 | 18.0 | 15.5 | 19.1 | 17.7 | 17.8 | 20.8 | 22.7 | 22.9 | 29.2 | 31.9 | 25.8 | 16.1 | 16.1 | 13.1 |
Codons per AA | 13,892 | 22,627 | 27,519 | 5,278 | 37,542 | 15,230 | 13,768 | 787,872 | 641,565 | 22,591 | 26,438 | 22,992 | 19,598 | 2,921 | 4,637 | 21,063 | ||
T | Thr | ACA | 30.6 | 28.0 | 24.8 | 21.6 | 27.1 | 28.4 | 28.3 | 34.2 | 29.6 | 16.3 | 51.5 | 50.9 | 38.6 | 35.0 | 21.9 | 22.6 |
T | Thr | ACC | 20.4 | 22.9 | 25.5 | 30.8 | 22.8 | 23.2 | 22.4 | 17.9 | 21.8 | 25.7 | 7.6 | 7.5 | 20.8 | 22.9 | 27.4 | 26.8 |
T | Thr | ACG | 18.9 | 21.8 | 22.6 | 22.6 | 19.9 | 21.5 | 22.1 | 15.2 | 17.2 | 24.9 | 3.9 | 3.2 | 9.2 | 16.3 | 27.9 | 28.8 |
T | Thr | ACT | 30.1 | 27.3 | 27.2 | 25.0 | 30.2 | 26.9 | 27.2 | 32.7 | 31.4 | 33.2 | 36.9 | 38.3 | 31.4 | 25.7 | 22.7 | 21.7 |
Codons per AA | 10,197 | 16,333 | 20,529 | 3,959 | 30,547 | 11,909 | 10,364 | 571,606 | 461,093 | 15,952 | 20,070 | 17,360 | 15,532 | 2,255 | 3,164 | 14,970 | ||
V | Val | GTA | 18.7 | 16.9 | 14.6 | 12.9 | 18.1 | 16.2 | 15.8 | 15.9 | 13.7 | 11.9 | 26.5 | 26.5 | 19.0 | 12.8 | 8.3 | 7.3 |
V | Val | GTC | 21.2 | 24.7 | 25.1 | 28.6 | 24.9 | 24.3 | 25.4 | 21.8 | 26.3 | 34.1 | 10.0 | 8.5 | 20.3 | 24.5 | 26.3 | 28.2 |
V | Val | GTG | 26.8 | 29.3 | 30.8 | 31.8 | 26.3 | 29.5 | 29.1 | 23.4 | 25.5 | 30.6 | 5.1 | 3.8 | 15.8 | 28.0 | 37.3 | 39.2 |
V | Val | GTT | 33.2 | 29.1 | 29.5 | 26.7 | 30.8 | 30.0 | 29.7 | 38.9 | 34.6 | 23.5 | 58.4 | 61.2 | 44.9 | 34.7 | 28.1 | 25.3 |
Codons per AA | 12,606 | 20,139 | 25,863 | 5,243 | 39,506 | 14,814 | 12,547 | 605,528 | 491,117 | 18,939 | 21,158 | 18,523 | 17,487 | 2,707 | 3,946 | 18,216 | ||
W | Typ | TGG | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 |
Codons per AA | 2,289 | 3,952 | 4,517 | 833 | 7,229 | 2,494 | 2,424 | 107,642 | 90,785 | 3,498 | 3,508 | 3,090 | 2,830 | 531 | 791 | 3,496 | ||
Y | Tyr | TAC | 51.6 | 56.5 | 59.8 | 62.8 | 52.7 | 54.6 | 55.7 | 44.0 | 47.1 | 64.9 | 18.5 | 18.0 | 36.6 | 39.4 | 57.1 | 61.6 |
Y | Tyr | TAT | 48.4 | 43.5 | 40.2 | 37.2 | 47.3 | 45.4 | 44.3 | 56.0 | 52.9 | 35.1 | 81.5 | 82.0 | 63.4 | 60.6 | 42.9 | 38.4 |
Codons per AA | 6,322 | 10,100 | 11,774 | 2,335 | 19,614 | 6,915 | 6,328 | 307,728 | 250,436 | 8,842 | 12,998 | 12,250 | 10,470 | 1,346 | 1,894 | 7,748 | ||
| Â | Â | Â | Species (codons [n]) | |||||||||||||||
AA | Â | Codon | HG (742,990) | Mi (366,435) | Mj (203,135) | Ma (176,816) | Mh (407,985) | Mc (205,612) | ZP (16,723) | AS (646,740) | AL (42,919) | TC (103,065) | BM (561,296) | DI (126,880) | OV (299,336) | TS (290,794) | TM (147,995) | TV (106,071) |
A | Ala | GCA | 22.3 | 32.2 | 32.3 | 32.8 | 34.9 | 36.9 | 19.5 | 32.7 | 31.7 | 29.3 | 39.1 | 40.0 | 37.5 | 31.7 | 24.1 | 26.7 |
A | Ala | GCC | 33.0 | 13.3 | 12.8 | 11.6 | 11.4 | 11.2 | 24.9 | 18.1 | 20.9 | 20.6 | 12.3 | 11.7 | 13.8 | 16.4 | 27.7 | 25.9 |
A | Ala | GCG | 25.9 | 8.1 | 8.0 | 7.0 | 7.3 | 6.8 | 7.4 | 22.8 | 23.9 | 23.7 | 12.3 | 12.8 | 14.3 | 18.4 | 22.7 | 22.1 |
A | Ala | GCT | 18.7 | 46.3 | 46.9 | 48.6 | 46.4 | 45.2 | 48.2 | 26.4 | 23.5 | 26.4 | 36.3 | 35.5 | 34.4 | 33.5 | 25.5 | 25.3 |
Codons per AA | 54,049 | 21,050 | 11,150 | 10,069 | 22,749 | 10,844 | 1,264 | 45,388 | 3,142 | 7,531 | 31,439 | 7,087 | 17,813 | 18,017 | 10,515 | 7,439.0 | ||
C | Cys | TGT | 44.5 | 71.4 | 72.8 | 73.7 | 74.3 | 72.9 | 56.3 | 48.8 | 48.8 | 42.8 | 61.2 | 62.9 | 60.0 | 51.8 | 31.8 | 33.8 |
C | Cys | TGC | 55.5 | 28.6 | 27.2 | 26.3 | 25.7 | 27.1 | 43.8 | 51.2 | 51.3 | 57.2 | 38.8 | 37.1 | 40.0 | 48.2 | 68.2 | 66.2 |
Codons per AA | 16,227 | 7,328 | 4,217 | 3,502 | 8,174 | 4,656 | 256 | 16,446 | 1,120 | 2,901 | 14,026 | 2,998 | 6,689 | 7,559 | 4,428 | 3,174.0 | ||
D | Asp | GAC | 65.5 | 26.5 | 27.1 | 24.8 | 24.2 | 22.2 | 32.1 | 35.2 | 41.0 | 40.5 | 24.0 | 20.5 | 20.6 | 33.2 | 56.3 | 56.1 |
D | Asp | GAT | 34.5 | 73.5 | 72.9 | 75.2 | 75.8 | 77.8 | 67.9 | 64.8 | 59.0 | 59.5 | 76.0 | 79.5 | 79.4 | 66.8 | 43.7 | 43.9 |
Codons per AA | 36,495 | 17,627 | 9,747 | 8,876 | 19,863 | 9,894 | 873 | 31,446 | 1,970 | 5,114 | 26,014 | 6,223 | 15,056 | 14,599 | 7,378 | 5,214.0 | ||
E | Glu | GAA | 55.7 | 75.3 | 74.6 | 76.2 | 76.6 | 78.4 | 77.9 | 56.5 | 55.4 | 52.8 | 73.9 | 77.0 | 77.1 | 79.0 | 61.4 | 61.8 |
E | Glu | GAG | 44.3 | 24.7 | 25.4 | 23.8 | 23.4 | 21.6 | 22.1 | 43.5 | 44.6 | 47.2 | 26.1 | 23.0 | 22.9 | 21.0 | 38.6 | 38.2 |
Codons per AA | 45,714 | 24,640 | 13,289 | 12,192 | 27,589 | 13,117 | 1,041 | 39,335 | 2,469 | 6,214 | 31,136 | 7,577 | 18,333 | 18,001 | 8,907 | 6,459.0 | ||
F | Phe | TTC | 48.9 | 24.3 | 21.8 | 20.9 | 21.3 | 18.1 | 55.3 | 54.5 | 56.6 | 60.0 | 35.0 | 37.3 | 36.9 | 34.3 | 53.0 | 52.6 |
F | Phe | TTT | 51.1 | 75.7 | 78.2 | 79.1 | 78.7 | 81.9 | 44.7 | 45.5 | 43.4 | 40.0 | 65.0 | 62.7 | 63.1 | 65.7 | 47.0 | 47.4 |
Codons per AA | 37,855 | 18,687 | 11,103 | 9,412 | 21,612 | 11,345 | 704 | 29,754 | 2,102 | 4,296 | 30,333 | 6,568 | 14,714 | 14,907 | 6,593 | 4,737.0 | ||
G | Gly | GGA | 25.5 | 44.5 | 44.7 | 45.8 | 45.8 | 46.2 | 33.3 | 31.2 | 31.0 | 32.5 | 32.7 | 35.4 | 35.0 | 31.1 | 29.9 | 31.7 |
G | Gly | GGC | 41.8 | 14.8 | 14.9 | 13.7 | 14.0 | 13.0 | 19.2 | 25.0 | 28.1 | 26.4 | 16.8 | 16.9 | 17.2 | 24.6 | 33.8 | 33.2 |
G | Gly | GGG | 15.7 | 13.7 | 13.6 | 13.0 | 10.0 | 8.6 | 4.9 | 10.6 | 11.1 | 10.6 | 10.2 | 7.9 | 9.2 | 9.1 | 9.5 | 11.0 |
G | Gly | GGT | 17.0 | 27.1 | 26.7 | 27.5 | 30.2 | 32.1 | 42.6 | 33.2 | 29.8 | 30.5 | 40.2 | 39.8 | 38.6 | 35.3 | 26.9 | 24.0 |
Codons per AA | 46,667 | 20,413 | 10,992 | 10,064 | 22,693 | 11,194 | 1,186 | 37,251 | 2,633 | 7,031 | 27,963 | 5,944 | 16,849 | 14,863 | 9,577 | 6,196.0 | ||
H | His | CAC | 51.6 | 28.1 | 27.8 | 24.8 | 25.4 | 22.3 | 33.7 | 38.8 | 41.3 | 43.8 | 29.2 | 22.2 | 25.2 | 39.0 | 51.0 | 49.7 |
H | His | CAT | 48.4 | 71.9 | 72.2 | 75.2 | 74.6 | 77.7 | 66.3 | 61.2 | 58.7 | 56.2 | 70.8 | 77.8 | 74.8 | 61.0 | 49.0 | 50.3 |
Codons per AA | 19,477 | 7,978 | 4,459 | 3,819 | 9,003 | 4,628 | 421 | 16,467 | 1,060 | 2,710 | 14,787 | 3,389 | 7,427 | 7,245 | 3,626 | 2,601.0 | ||
I | Ile | ATA | 9.7 | 23.0 | 23.1 | 22.9 | 23.5 | 25.3 | 13.8 | 23.2 | 21.9 | 19.6 | 29.5 | 29.2 | 27.5 | 25.0 | 26.6 | 27.0 |
I | Ile | ATC | 35.7 | 12.5 | 11.7 | 11.2 | 11.0 | 9.8 | 36.5 | 36.2 | 39.7 | 40.7 | 22.3 | 23.0 | 24.7 | 21.5 | 29.7 | 27.9 |
I | Ile | ATT | 54.7 | 64.5 | 65.1 | 65.9 | 65.5 | 64.8 | 49.7 | 40.6 | 38.3 | 39.7 | 48.3 | 47.8 | 47.7 | 53.5 | 43.6 | 45.2 |
Codons per AA | 38,860 | 23,849 | 13,986 | 12,183 | 28,528 | 15,200 | 1,018 | 38,551 | 2,582 | 5,486 | 39,971 | 9,443 | 20,692 | 17,746 | 7,330 | 5,428.0 | ||
K | Lys | AAA | 60.2 | 72.5 | 72.6 | 73.2 | 74.7 | 76.6 | 61.2 | 53.8 | 53.4 | 53.4 | 69.0 | 69.4 | 69.5 | 69.4 | 44.6 | 47.3 |
K | Lys | AAG | 39.8 | 27.5 | 27.4 | 26.8 | 25.3 | 23.4 | 38.8 | 46.2 | 46.6 | 46.6 | 31.0 | 30.6 | 30.5 | 30.6 | 55.4 | 52.7 |
Codons per AA | 44,829 | 26,575 | 15,780 | 12,963 | 29,876 | 15,288 | 1,324 | 40,639 | 2,742 | 7,563 | 37,793 | 8,913 | 21,167 | 19,233 | 9,334 | 6,794.0 | ||
L | Leu | CTA | 3.1 | 6.7 | 6.4 | 6.3 | 6.3 | 6.9 | 8.1 | 10.4 | 9.9 | 10.5 | 10.3 | 9.9 | 9.5 | 5.8 | 7.9 | 8.7 |
L | Leu | CTC | 17.1 | 7.1 | 6.6 | 6.0 | 6.4 | 5.7 | 15.9 | 18.9 | 19.3 | 19.1 | 7.8 | 7.2 | 7.6 | 6.9 | 10.9 | 11.1 |
L | Leu | CTG | 21.5 | 5.0 | 4.7 | 4.7 | 4.8 | 4.5 | 4.5 | 14.8 | 16.1 | 18.0 | 13.0 | 10.9 | 13.8 | 16.0 | 24.7 | 23.4 |
L | Leu | CTT | 17.9 | 24.7 | 25.0 | 25.2 | 25.3 | 26.0 | 25.1 | 21.2 | 20.7 | 20.5 | 19.7 | 19.8 | 19.6 | 17.3 | 18.0 | 18.6 |
L | Leu | TTA | 6.6 | 30.9 | 31.4 | 32.3 | 33.4 | 35.3 | 17.5 | 13.5 | 12.8 | 10.1 | 26.1 | 27.8 | 24.6 | 17.3 | 9.2 | 9.7 |
L | Leu | TTG | 33.8 | 25.6 | 25.9 | 25.5 | 23.8 | 21.7 | 29.0 | 21.3 | 21.2 | 21.7 | 23.1 | 24.5 | 24.9 | 36.8 | 29.4 | 28.5 |
Codons per AA | 68,607 | 34,549 | 19,485 | 17,118 | 38,589 | 20,003 | 1,397 | 56,369 | 3,564 | 8,233 | 53,591 | 12,048 | 26,576 | 27,491 | 13,110 | 9,558 | ||
M | Met | ATG | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 |
Codons per AA | 18,014 | 8,593 | 4,930 | 4,095 | 9,532 | 4,730 | 306 | 16,510 | 1,091 | 2,477 | 15,883 | 3,373 | 7,990 | 7,625 | 3,836 | 2,785 | ||
N | Asn | AAC | 48.6 | 22.3 | 20.9 | 19.9 | 18.8 | 17.6 | 46.6 | 43.2 | 44.1 | 49.1 | 27.2 | 23.8 | 25.1 | 34.9 | 53.1 | 53.1 |
N | Asn | AAT | 51.4 | 77.7 | 79.1 | 80.1 | 81.2 | 82.4 | 53.4 | 56.8 | 55.9 | 50.9 | 72.8 | 76.2 | 74.9 | 65.1 | 46.9 | 46.9 |
Codons per AA | 33,133 | 20,562 | 11,306 | 9,756 | 23,509 | 12,351 | 779 | 28,917 | 1,836 | 4,201 | 28,196 | 6,554 | 14,572 | 14,343 | 5,930 | 4,424 | ||
P | Pro | CCA | 24.2 | 40.6 | 39.9 | 41.3 | 44.8 | 45.0 | 46.5 | 36.9 | 32.5 | 34.9 | 45.0 | 45.5 | 44.2 | 38.3 | 30.0 | 30.3 |
P | Pro | CCC | 24.5 | 10.6 | 9.6 | 8.8 | 7.9 | 7.2 | 14.2 | 14.9 | 18.4 | 17.1 | 10.7 | 8.5 | 9.7 | 10.9 | 17.7 | 17.1 |
P | Pro | CCG | 34.9 | 10.5 | 11.2 | 10.7 | 8.5 | 8.5 | 11.7 | 24.7 | 24.5 | 24.6 | 19.1 | 19.2 | 22.9 | 24.4 | 28.4 | 28.7 |
P | Pro | CCT | 16.4 | 38.3 | 39.3 | 39.1 | 38.9 | 39.3 | 27.6 | 23.5 | 24.7 | 23.4 | 25.2 | 26.8 | 23.2 | 26.3 | 23.8 | 23.9 |
Codons per AA | 36,929 | 16,614 | 8,537 | 7,305 | 17,440 | 8,307 | 768 | 30,784 | 2,276 | 5,519 | 23,108 | 4,915 | 13,464 | 11,909 | 7,466 | 5,066 | ||
Q | Gln | CAA | 57.1 | 79.4 | 79.6 | 80.2 | 80.9 | 80.3 | 82.0 | 57.4 | 57.1 | 50.2 | 61.4 | 63.6 | 62.8 | 59.9 | 50.4 | 50.3 |
Q | Gln | CAG | 42.9 | 20.6 | 20.4 | 19.8 | 19.1 | 19.7 | 18.0 | 42.6 | 42.9 | 49.8 | 38.6 | 36.4 | 37.2 | 40.1 | 49.6 | 49.7 |
Codons per AA | 33,107 | 16,926 | 8,552 | 7,532 | 17,739 | 8,805 | 640 | 23,271 | 1,514 | 3,612 | 21,428 | 4,769 | 11,797 | 11,420 | 5,644 | 4,047 | ||
R | Arg | AGA | 11.6 | 28.8 | 28.1 | 29.2 | 30.0 | 30.0 | 16.4 | 17.7 | 16.3 | 17.2 | 22.3 | 21.9 | 21.2 | 21.8 | 16.3 | 17.6 |
R | Arg | CGA | 18.0 | 16.8 | 16.8 | 17.3 | 16.7 | 17.2 | 17.3 | 21.3 | 18.5 | 19.7 | 24.0 | 26.3 | 25.4 | 22.7 | 18.1 | 17.7 |
R | Arg | AGG | 9.0 | 9.7 | 9.4 | 8.8 | 8.9 | 8.6 | 2.9 | 12.3 | 11.8 | 12.4 | 10.9 | 8.8 | 9.5 | 7.1 | 12.4 | 13.2 |
R | Arg | CGC | 25.0 | 9.4 | 9.2 | 8.5 | 8.8 | 7.9 | 15.3 | 15.8 | 20.2 | 17.3 | 9.6 | 9.4 | 10.4 | 13.7 | 22.9 | 21.8 |
R | Arg | CGG | 15.8 | 5.6 | 5.4 | 4.9 | 4.5 | 4.5 | 1.2 | 8.3 | 7.9 | 7.2 | 9.2 | 8.4 | 8.8 | 8.5 | 11.6 | 11.5 |
R | Arg | CGT | 20.6 | 29.7 | 31.0 | 31.4 | 31.1 | 31.8 | 47.0 | 24.6 | 25.3 | 26.2 | 24.0 | 25.2 | 24.8 | 26.1 | 18.7 | 18.2 |
Codons per AA | 47,178 | 19,486 | 11,042 | 9,171 | 21,409 | 9,973 | 1,001 | 40,766 | 2,650 | 6,429 | 31,420 | 7,457 | 17,634 | 16,384 | 9,203 | 6,468 | ||
S | Ser | AGC | 15.5 | 9.1 | 9.4 | 8.4 | 7.9 | 7.6 | 11.8 | 16.4 | 16.6 | 17.1 | 11.0 | 9.7 | 11.1 | 15.1 | 23.2 | 22.5 |
S | Ser | TCA | 14.4 | 24.5 | 24.3 | 24.1 | 27.0 | 28.6 | 18.1 | 22.3 | 20.8 | 19.6 | 28.4 | 29.5 | 27.7 | 21.0 | 14.4 | 15.5 |
S | Ser | TCC | 20.8 | 9.0 | 8.6 | 7.9 | 6.8 | 6.6 | 15.7 | 9.9 | 12.0 | 11.0 | 10.4 | 9.3 | 10.7 | 10.3 | 17.7 | 17.3 |
S | Ser | AGT | 12.5 | 17.6 | 17.2 | 18.5 | 18.1 | 18.4 | 13.6 | 15.8 | 13.8 | 14.4 | 19.2 | 18.7 | 19.1 | 19.1 | 13.3 | 13.8 |
S | Ser | TCG | 22.4 | 7.8 | 8.3 | 7.9 | 6.2 | 6.2 | 13.3 | 21.4 | 22.3 | 24.8 | 12.2 | 12.8 | 14.0 | 14.4 | 19.1 | 18.3 |
S | Ser | TCT | 14.3 | 31.9 | 32.1 | 33.3 | 34.0 | 32.5 | 27.5 | 14.3 | 14.4 | 13.1 | 18.9 | 20.0 | 17.5 | 20.1 | 12.2 | 12.6 |
Codons per AA | 54,466 | 27,606 | 14,239 | 12,353 | 29,702 | 15,207 | 899 | 48,736 | 3,157 | 6,860 | 43,504 | 9,483 | 21,762 | 22,175 | 10,980 | 7,907 | ||
T | Thr | ACA | 23.2 | 40.6 | 39.2 | 41.1 | 42.3 | 42.7 | 19.5 | 30.2 | 30.3 | 27.5 | 39.0 | 40.1 | 38.1 | 31.8 | 21.3 | 25.1 |
T | Thr | ACC | 25.6 | 11.1 | 9.9 | 9.0 | 9.1 | 7.9 | 28.6 | 19.2 | 22.4 | 20.0 | 15.6 | 12.9 | 15.6 | 16.3 | 24.9 | 23.1 |
T | Thr | ACG | 26.6 | 8.4 | 8.8 | 8.6 | 8.5 | 7.7 | 12.5 | 26.8 | 24.9 | 29.2 | 15.4 | 16.3 | 17.4 | 19.8 | 30.9 | 30.3 |
T | Thr | ACT | 24.6 | 39.8 | 42.1 | 41.4 | 40.1 | 41.7 | 39.4 | 23.8 | 22.4 | 23.2 | 30.0 | 30.7 | 28.9 | 32.1 | 22.9 | 21.5 |
Codons per AA | 37,607 | 19,046 | 10,254 | 8,837 | 20,194 | 10,213 | 919 | 34,207 | 2,219 | 5,814 | 29,901 | 6,460 | 15,488 | 14,901 | 7,680 | 5,829 | ||
V | Val | GTA | 6.0 | 17.6 | 16.9 | 17.5 | 17.0 | 20.7 | 14.1 | 16.4 | 16.6 | 16.4 | 25.4 | 26.2 | 26.3 | 19.4 | 16.6 | 17.7 |
V | Val | GTC | 29.6 | 13.2 | 12.3 | 11.9 | 11.4 | 10.7 | 29.2 | 20.6 | 21.7 | 21.3 | 14.3 | 14.0 | 14.4 | 16.7 | 22.8 | 21.9 |
V | Val | GTG | 38.3 | 13.5 | 13.2 | 11.7 | 12.9 | 11.7 | 12.9 | 29.7 | 31.1 | 30.7 | 22.9 | 21.2 | 21.6 | 26.3 | 27.6 | 28.3 |
V | Val | GTT | 26.1 | 55.8 | 57.6 | 58.9 | 58.6 | 56.9 | 43.8 | 33.2 | 30.6 | 31.5 | 37.5 | 38.7 | 37.7 | 37.6 | 33.0 | 32.1 |
Codons per AA | 45,942 | 19,706 | 10,925 | 9,899 | 21,917 | 10,703 | 1,109 | 42,490 | 2,780 | 6,580 | 33,067 | 7,389 | 17,037 | 18,805 | 9,977 | 7,169 | ||
W | Typ | TGG | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 |
Codons per AA | 9,033 | 4,055 | 2,294 | 2,002 | 4,746 | 2,298 | 188 | 7,902 | 532 | 1,213 | 6,380 | 1,377 | 3,584 | 3,486 | 1,777 | 1,350 | ||
Y | Tyr | TAC | 58.9 | 23.2 | 22.2 | 20.9 | 21.4 | 19.6 | 34.6 | 37.3 | 41.2 | 46.0 | 30.3 | 26.0 | 28.4 | 38.7 | 61.8 | 62.7 |
Y | Tyr | TAT | 41.1 | 76.8 | 77.8 | 79.1 | 78.6 | 80.4 | 65.4 | 62.7 | 58.8 | 54.0 | 69.7 | 74.0 | 71.6 | 61.3 | 38.2 | 37.3 |
Codons per AA | 18,687 | 11,019 | 6,656 | 5,582 | 12,940 | 6,716 | 627 | 21,299 | 1,453 | 3,267 | 20,353 | 4,785 | 10,337 | 9,939 | 4,691 | 3,401 | ||