Table 3 Frequency of individual repetitive elements in D. virilis
Repeat element | Class | Number | Average size (bp) | Largest size (bp) | Percent of total repeats |
|---|---|---|---|---|---|
Ten most frequent repeat types (D. virilis dot) | |||||
dvir.16.2.centroid | DNA | 94 | 178 | 1,071 | 23.4 |
Penelope | LINE | 35 | 199 | 427 | 9.8 |
dvir.2.37.centroid | LTR | 1 | 6,832 | 6,832 | 9.6 |
dvir.0.85.centroid | LINE | 8 | 764 | 3,711 | 8.6 |
dvir.11.33.centroid | Tandem Repeat | 31 | 191 | 615 | 8.3 |
dvir.5.67.centroid | LTR | 1 | 5,406 | 5,406 | 7.6 |
dvir.7.88.centroid | LINE | 1 | 3,370 | 3,370 | 4.7 |
dvir.16.17.centroid | DNA | 15 | 207 | 739 | 4.3 |
dvir.11.23.centroid | Tandem Repeat | 13 | 186 | 430 | 3.4 |
dvir.22.25.centroid | Unknown | 6 | 391 | 669 | 3.3 |
Other | Â | Â | Â | Â | 16.9 |
Ten most frequent repeat types (D. melanogaster dot) | |||||
DNAREP1_DM (DINE-1) | DNA | 126 | 201 | 631 | 34.5 |
yakuba_cons (DINE-1) | DNA | 54 | 170 | 722 | 12.4 |
FB4_DM | DNA | 8 | 630 | 1,215 | 6.8 |
PROTOP | DNA | 5 | 938 | 3,615 | 6.4 |
PROTOP_A (1360) | DNA | 9 | 518 | 1,111 | 6.3 |
DMCR1A | LINE | 8 | 528 | 1,253 | 5.7 |
PROTOP_B | DNA | 14 | 221 | 1,083 | 4.2 |
TC1_DM (Tc1) | DNA | 8 | 343 | 990 | 3.7 |
TART | LINE | 5 | 520 | 663 | 3.5 |
BARI1_DM (Bari) | DNA | 1 | 1,728 | 1,728 | 2.3 |
Other | Â | Â | Â | Â | 14.0 |