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Table 1 Expression patterns of known and putative X-box containing C. elegans genes revealed by promoter::GFP transgenic analyses

From: Identification of ciliary and ciliopathy genes in Caenorhabditis elegansthrough comparative genomics

Gene Locus SAGE Microarray Previous X-box prediction WormBase description/annotation Anatomical expression
     Blacque et al. [17] Efimenko et al. [16]   
C02H7.1 - - - + + Microtubule-binding protein MIP-T3 ADF, ADL, AFD, ASG, ASH, ASI, ASJ, ASK, AWB, PHA, PHB, URX [22]; head neurons, amphid, tail neurons, phasmid [17]
C04C3.3* - -0.15 0.9   + Pyruvate dehydrogenase E1, beta subunit Pharynx, body wall muscle, head neurons, tail neurons
C27A7.4 che-11 0.21 3   + Intraflagellar transport 140 homolog Many, most, all ciliated neurons [16,18,63,64]
C38D4.8 arl-6 (bbs-3) - -    ADP-ribosylation factor-like protein 6 (BBS3) Head neurons, tail neurons [8]
D1009.5 dylt-2 (xbx-2) 0.31 10.4 + + Dynein light chain Many, most, all ciliated neurons [16]
F02D8.3 xbx-1 - 22.7   + Dynein 2 light intermediate chain, isoform 1 Many, most, all ciliated neurons [16,65]
F09G2.8* - 0.86 -    Phospholipase D3, isoform 1 Pharynx, head neurons
F20D12.3 bbs-2 0.89 - + + Bardet-Biedl syndrome 2 protein Many, most, all ciliated neurons [10,16]
F32A6.2* - 0.87 6 +   Splice isoform 2 of intraflagellar transport 81 Head neurons, tail neurons
F38G1.1 che-2 0.82 11 + + Intraflagellar transport 80 homolog Many, most, all ciliated neurons [6,66]
F40F9.1a xbx-6 -0.41 -    Fas apoptotic inhibitory molecule 2 Body wall muscles, pharyngeal muscles, ventral nerve cord, phasmids [16]
F41E7.9* - - -   + Mitogen-activated protein kinase kinase kinase kinase 4 isoform 2 Head neurons, tail neurons, hypodermis
K07G5.3 - - 22.6 +   C2 Ca2+-binding motif-containing protein Head neurons, tail neurons [17]
M04C9.5* dyf-5 - 5.3   + Serine/threonine-protein kinase MAK Amphids and phasmids
R01H10.6 bbs-5 0.95 4.6 + + Bardet-Biedl Syndrome 5 protein Many, most, all ciliated neurons [9,16]
R31.3 osm-6 -0.11 34 + + Intraflagellar transport 52 homolog Many, most, all ciliated neurons [6,67]
T25F10.5 bbs-8 0.46 7.7   + Bardet-Biedl Syndrome 8 protein Many, most, all ciliated neurons [10,16,18]
T27B1.1 osm-1 - 4.3 + + Predicted intraflagellar transport raft protein Many, most, all ciliated neurons [6,68]
Y105E8A.5 bbs-1 0.56 5.3 + + Bardet-Biedl syndrome 1 protein Many, most, all ciliated neurons [10,16]
Y110A7A.20* - - -   + Intraflagellar transport protein 20 homolog Head neurons, tail neurons [17]
Y37D8A.17 - - -   + Uncharacterized integral membrane protein Pharynx
Y41G9A.1 osm-5 0.58 5.3 + + Tg737/IFT88 protein Many, most, all ciliated neurons [10,16,69]
Y69A2AR.2a* ric-8 -0.21 -    Signaling protein RIC-8/synembryn Amphids and phasmids
Y75B8A.12 osm-12 (bbs-7) - 2.1   + Bardet-Biedl Syndrome 7 protein Many, most, all ciliated neurons [10,16]
ZK520.3 dyf-2 - 16.6    WD repeat membrane protein Amphids, tail neurons [23]
  1. *Genes in these rows are uncharacterized X-box containing genes. Connections between gene names (for example, M04C9.5) and locus names (for example, dyf-5) were made in this project. The unreferenced expression data were taken from the C. elegans Gene Expression Consortium database [33].