| |
Class
|
Total bp TE
|
% TE
|
No. of TEs
|
No. of TE per Mbp
|
No. of TE full length
|
% TE full length
|
No. of TE nested
|
% TE nested
|
|---|
|
Genome
|
LTR
|
3,896,903
|
3.29
|
1,321
|
11.16
|
325
|
24.60
|
327
|
24.75
|
| |
Non-LTR
|
1,502,997
|
1.27
|
1,019
|
8.61
|
121
|
11.87
|
197
|
19.33
|
| |
TIR
|
559,234
|
0.47
|
752
|
6.35
|
57
|
7.58
|
157
|
20.88
|
| |
INE-1
|
490,996
|
0.41
|
2,238
|
18.91
|
26
|
1.16
|
91
|
4.07
|
| |
FB
|
60,509
|
0.05
|
60
|
0.51
|
1
|
1.67
|
13
|
21.67
|
| |
Total
|
6,510,639
|
5.50
|
5,390
|
45.54
|
530
|
9.83
|
785
|
14.56
|
|
Non-pericentromeric
|
LTR
|
2,510,569
|
2.42
|
515
|
4.96
|
250
|
48.54
|
80
|
15.53
|
| |
Non-LTR
|
646,020
|
0.62
|
336
|
3.24
|
80
|
22.92
|
9
|
2.68
|
| |
TIR
|
151,997
|
0.15
|
214
|
2.06
|
25
|
11.68
|
12
|
5.61
|
| |
INE-1
|
106,597
|
0.10
|
660
|
6.36
|
5
|
0.76
|
8
|
1.21
|
| |
FB
|
28,125
|
0.03
|
23
|
0.22
|
1
|
4.35
|
3
|
13.04
|
| |
Total
|
3,443,308
|
3.32
|
1,748
|
16.85
|
361
|
20.48
|
112
|
6.41
|
|
Pericentromeric
|
LTR
|
1,324,428
|
9.94
|
776
|
58.24
|
70
|
9.02
|
241
|
31.06
|
| |
Non-LTR
|
802,040
|
6.02
|
623
|
46.75
|
42
|
6.58
|
169
|
27.13
|
| |
TIR
|
323,226
|
2.43
|
436
|
32.72
|
29
|
6.65
|
115
|
26.38
|
| |
INE-1
|
300,615
|
2.26
|
1,234
|
92.61
|
17
|
1.38
|
71
|
5.75
|
| |
FB
|
27,773
|
0.21
|
32
|
2.40
|
0
|
0.00
|
9
|
28.13
|
| |
Total
|
2,778,082
|
20.85
|
3,101
|
232.72
|
158
|
5.06
|
605
|
19.51
|
|
Chromosome 4
|
LTR
|
61,906
|
4.83
|
30
|
23.41
|
5
|
16.67
|
6
|
20.00
|
| |
Non-LTR
|
54,937
|
4.29
|
60
|
46.82
|
3
|
5.00
|
19
|
31.67
|
| |
TIR
|
84,011
|
6.55
|
102
|
79.59
|
3
|
2.94
|
30
|
29.41
|
| |
INE-1
|
83,784
|
6.54
|
344
|
268.41
|
4
|
1.16
|
12
|
3.49
|
| |
FB
|
4,611
|
0.36
|
5
|
3.90
|
0
|
0.00
|
1
|
20.00
|
| |
Total
|
289,249
|
22.57
|
541
|
422.12
|
15
|
2.77
|
68
|
12.57
|
- Overall abundance was partitioned into pericentromeric and non-pericentromeric regions according to the text. Full-length elements were defined as ± 3% of the canonical element. Both inner and outer components of a TE nest were considered nested.
