| Class | Total bp TE | % TE | No. of TEs | No. of TE per Mbp | No. of TE full length | % TE full length | No. of TE nested | % TE nested |
---|---|---|---|---|---|---|---|---|---|
Genome | LTR | 3,896,903 | 3.29 | 1,321 | 11.16 | 325 | 24.60 | 327 | 24.75 |
 | Non-LTR | 1,502,997 | 1.27 | 1,019 | 8.61 | 121 | 11.87 | 197 | 19.33 |
 | TIR | 559,234 | 0.47 | 752 | 6.35 | 57 | 7.58 | 157 | 20.88 |
 | INE-1 | 490,996 | 0.41 | 2,238 | 18.91 | 26 | 1.16 | 91 | 4.07 |
 | FB | 60,509 | 0.05 | 60 | 0.51 | 1 | 1.67 | 13 | 21.67 |
 | Total | 6,510,639 | 5.50 | 5,390 | 45.54 | 530 | 9.83 | 785 | 14.56 |
Non-pericentromeric | LTR | 2,510,569 | 2.42 | 515 | 4.96 | 250 | 48.54 | 80 | 15.53 |
 | Non-LTR | 646,020 | 0.62 | 336 | 3.24 | 80 | 22.92 | 9 | 2.68 |
 | TIR | 151,997 | 0.15 | 214 | 2.06 | 25 | 11.68 | 12 | 5.61 |
 | INE-1 | 106,597 | 0.10 | 660 | 6.36 | 5 | 0.76 | 8 | 1.21 |
 | FB | 28,125 | 0.03 | 23 | 0.22 | 1 | 4.35 | 3 | 13.04 |
 | Total | 3,443,308 | 3.32 | 1,748 | 16.85 | 361 | 20.48 | 112 | 6.41 |
Pericentromeric | LTR | 1,324,428 | 9.94 | 776 | 58.24 | 70 | 9.02 | 241 | 31.06 |
 | Non-LTR | 802,040 | 6.02 | 623 | 46.75 | 42 | 6.58 | 169 | 27.13 |
 | TIR | 323,226 | 2.43 | 436 | 32.72 | 29 | 6.65 | 115 | 26.38 |
 | INE-1 | 300,615 | 2.26 | 1,234 | 92.61 | 17 | 1.38 | 71 | 5.75 |
 | FB | 27,773 | 0.21 | 32 | 2.40 | 0 | 0.00 | 9 | 28.13 |
 | Total | 2,778,082 | 20.85 | 3,101 | 232.72 | 158 | 5.06 | 605 | 19.51 |
Chromosome 4 | LTR | 61,906 | 4.83 | 30 | 23.41 | 5 | 16.67 | 6 | 20.00 |
 | Non-LTR | 54,937 | 4.29 | 60 | 46.82 | 3 | 5.00 | 19 | 31.67 |
 | TIR | 84,011 | 6.55 | 102 | 79.59 | 3 | 2.94 | 30 | 29.41 |
 | INE-1 | 83,784 | 6.54 | 344 | 268.41 | 4 | 1.16 | 12 | 3.49 |
 | FB | 4,611 | 0.36 | 5 | 3.90 | 0 | 0.00 | 1 | 20.00 |
 | Total | 289,249 | 22.57 | 541 | 422.12 | 15 | 2.77 | 68 | 12.57 |