From: Analysis of the Saccharomyces cerevisiae proteome with PeptideAtlas
 | Plimit = 0.9, Nobs > 0 | Plimit = 0.95, Nobs > 0 | Plimit = 0.99, Nobs > 0 | Plimit = 0.9, Nobs > 1 | Plimit = 0.95, Nobs > 1 | Plimit = 0.99, Nobs > 1 |
---|---|---|---|---|---|---|
# Experiments | 47 | 47 | 47 | 47 | 47 | 47 |
# MS runs | 2,579 | 2,579 | 2,579 | 2,579 | 2,579 | 2,579 |
# MS/MS | 4.9 M | 4.9 M | 4.9 M | 4.9 M | 4.9 M | 4.9 M |
# MS/MS with P ≥ Plimit | 600,960 | 565,217 | 472,234 | 586,708 | 552,434 | 461,827 |
# Distinct peptides with P ≥ Plimit | 36,133 | 33,377 | 27,909 | 21,840 | 21,646 | 20,251 |
# Distinct peptides with perfect SGD alignment | 35,434 | 32,790 | 27,499 | 21,469 | 21,281 | 19,942 |
# SGD ORFs seen in PeptideAtlas | 4,249 (62%) | 3,903 (57%) | 3,476 (51%) | 3,069 (45%) | 3,049 (45%) | 2,935 (43%) |
# SGD ORFs unambiguously seen in PeptideAtlas | 3,980 (59%) | 3644 (54%) | 3,224 (47%) | 2,795 (41%) | 2,778 (41%) | 2,672 (39%) |