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Table 1 List of experiments

From: Analysis of the Saccharomyces cerevisiae proteome with PeptideAtlas

Experiment Instrument Treatment/labeling Separation Strain Data contributors Affiliation Reference
gricat LCQ Classic ICAT SCX BY4741 J Ranish, T Ideker ISB [42]
cdc15_cdc23_newICAT LCQ DECA clICAT SCX BY4742 B Raught ISB -
cdc15_cdc23_oldICAT LCQ DECA ICAT SCX BY4742 B Raught ISB -
cdc15_cdc23_ICAT LCQ DECA clICAT SCX BY4742 B Raught ISB -
cdc23_amf_newICAT LCQ DECA clICAT SCX BY4742 B Raught ISB -
contFFE2Murea LCQ DECA clICAT SCX BY4741 ? F Kregenow, R Aebersold ISB -
FFEY1 LCQ DECA FFE Unknown BY4741 ? F Kregenow, R Aebersold ISB -
FFEY1Scx LCQ DECA FFE SCX BY4741 ? F Kregenow, R Aebersold ISB -
FFEY2 LCQ DECA XP FFE Unknown BY4741 ? F Kregenow, R Aebersold ISB -
PeteryeastIcatstdFFE LCQ DECA XP clICAT Unknown BY4741 ? F Kregenow, R Aebersold ISB -
TSAAT000c LCQ DECA XP clICAT SCX BY2125 M Flory et al. ISB [43]
TSAAT030c LCQ DECA XP clICAT SCX BY2125 M Flory et al. ISB [43]
TSAAT060c LCQ DECA XP clICAT SCX BY2125 M Flory et al. ISB [43]
TSAAT090c LCQ DECA XP clICAT SCX BY2125 M Flory et al. ISB [43]
TSAAT120c LCQ DECA XP clICAT SCX BY2125 M Flory et al. ISB [43]
TSAAxT000old LCQ DECA ICAT SCX BY2125 M Flory ISB [43]
T00 LCQ DECA XP ICAT SCX BY2125 M Flory ISB [43]
T30 LCQ DECA XP ICAT SCX BY2125 M Flory ISB [43]
T50 LCQ DECA XP ICAT SCX BY2125 M Flory ISB [43]
opd00034_YEAST LCQ DECA XP None SCX DBY8724 P Lu University of Texas [44]
opd00035_YEAST LCQ DECA XP None SCX DBY8724 P Lu University of Texas [44]
peroximalPrep0702 LCQ Classic ICAT SCX BY4743 M Marelli et al. ISB [45]
Comp12vs12sizefrac LCQ DECA Iodoacetemide SCX BY4741 DB Martin ISB -
pxproteome LCQ DECA clICAT SCX BY4743 M Marelli et al. ISB [45]
Comp12vs12standSCX LCQ DECA Iodoacetemide SCX BY4741 DB Martin ISB -
YeastICAT LCQ Classic ICAT SCX Derivative of BY4741 J Ranish ISB -
PvM1 LCQ Classic ICAT SCX BY4743 M Marelli et al. ISB [45]
peroximal_clICAT LCQ Classic clICAT SCX BY4743 M Marelli et al. ISB [45]
Ac30 LCQ DECA XP clICAT SCX BY1782, BY2125 KR Serikawa et al. University of Washington [46]
yeast LCQ DECA Iodoacetemide SCX YPH499 Gygi et al. Harvard Medical School [47]
gel_msms LCQ DECA Iodoacetemide Gel, SCX BY4742 Ho et al. MDS Proteomics [30]
mudpit LCQ DECA XP PLUS Iodoacetemide SDS-PAGE, SCX YRP480 P Haynes et al. University of Arizona [48]
ipg_ief LCQ DECA XP PLUS Iodoacetemide SDS-PAGE, IEF YRP480 P Haynes et al. University of Arizona [48]
rp_int_selected LCQ DECA XP PLUS Iodoacetemide SDS-PAGE YRP480 P Haynes et al. University of Arizona [48]
rp_mass_selected LCQ DECA XP PLUS Iodoacetemide SDS-PAGE YRP480 P Haynes et al. University of Arizona [48]
sdspage LCQ DECA XP PLUS Iodoacetemide SDS-PAGE YRP480 P Haynes et al. University of Arizona [48]
YM_N14N15_DAYGly LCQ Classic None Unknown DBY8724 P Lu University of Texas [44]
YM_N14N15_DAYSer LCQ Classic None Unknown DBY8724 P Lu University of Texas [44]
YM_N14N15_SCYGly LCQ Classic None Unknown DBY8724 P Lu University of Texas [44]
YM_N14N15_SCYSer LCQ Classic None Unknown DBY8724 P Lu University of Texas [44]
APEX_04-22 LCQ Classic None Unknown DBY8724 P Lu University of Texas [44]
APEX_04-23 LCQ Classic None Unknown DBY8724 P Lu University of Texas [44]
APEX_04-24 LCQ Classic None Unknown DBY8724 P Lu University of Texas [44]
APEX_04-28 LCQ Classic None Unknown DBY8724 P Lu University of Texas [44]
YeastSCXReps LCQ Classic Iodacetimide SCX BY4741 Maynard et al. NIH [49]
FFE_nonICAT LCQ Classic Iodacetimide FFE BY2125? Mingliang Ye ISB  
  1. clICAT is acid cleavable ICAT D0227/D9236 and ICAT is the older ICAT reagent D0422/D8450. FFE, free flow electrophoresis; IEF, is isoelectric focusing; SCX, strong cation exchange; SDS-PAGE, sodium dodecyl (lauryl) sulfate-polyacrylamide gel electrophoresis.