From: A computational method to predict genetically encoded rare amino acids in proteins
Accession ID | Organism | Computationally identified selenoproteins* annotated by their homologs |
---|---|---|
AE000657 | Aquifex aeolicus | 1. gi|12515210|gb|AAG56295.1|AE005358_3 formate dehydrogenase-N, nitrate-inducible, alpha subunit [Escherichia coli] |
 |  | 2. gi|51589698|emb|CAH21328.1| selenide, water dikinase [Yersinia pseudotuberculosis IP 32953] |
AE017125 | Helicobacter hepaticus | 1.gi|27362035|gb|AAO10941.1|AE016805_198 formate dehydrogenase, alpha subunit [Vibrio vulnificus CMCP6] |
 |  | 2. gi|46914191|emb|CAG20971.1| putative selenophosphate synthase [Photobacterium profundum] |
AE017143 | Haemophilus ducreyi 35000HP | 1. gi|26108424|gb|AAN80626.1|AE016761_201 selenide, water dikinase [Escherichia coli CFT073] |
AE004439 | Pasteurella multocida | 1. gi|2983532|gb|AAC07107.1| formate dehydrogenase, alpha subunit [Aquifex aeolicus VF5] |
 |  | 2. gi|5103639|dbj|BAA79160.1| 194 amino acid long hypothetical protein [ Aeropyrum pernix K1] |
AE005674 | Shigella flexneri 2a | 1. gi|12515215|gb|AAG56300.1|AE005358_8 orf; unknown function [ Escherichia coli O157:H7 EDL933] |
 |  | 2. gi|1788928|gb|AAC75627.1| quinolinate synthetase, B protein; quinolinate synthetase, B protein, catalytic and NAD/flavoprotein subunit [ Escherichia coli >K12] |
 |  | 3. gi|2983532|gb|AAC07107.1| formate dehydrogenase, alpha subunit [Aquifex aeolicus VF5] |
 |  | 4. gi|2983532|gb|AAC07107.1| formate dehydrogenase, alpha subunit [Aquifex aeolicus VF5] |
 |  | 5. gi|3868721|gb|AAD13462.1| selenopolypeptide subunit of formate dehydrogenase H; formate dehydrogenase H, selenopolypeptide subunit [Escherichia coli K12] |
AE014073 | Shigella flexneri 2a | 1. gi|2983532|gb|AAC07107.1| formate dehydrogenase, alpha subunit [Aquifex aeolicus VF5] |
 |  | 2. gi|1788928|gb|AAC75627.1| quinolinate synthetase, B protein; quinolinate synthetase, B protein, catalytic and NAD/flavoprotein subunit [ Escherichia coli K12] |
 |  | 3. gi|2983532|gb|AAC07107.1| formate dehydrogenase, alpha subunit [Aquifex aeolicus VF5] |
 |  | 4. gi|3868721|gb|AAD13462.1| selenopolypeptide subunit of formate dehydrogenase H; formate dehydrogenase H, selenopolypeptide subunit [Escherichia coli K12] |
AE006469 | Sinorhizobium meliloti | 1. gi|2983532|gb|AAC07107.1| formate dehydrogenase, alpha subunit [Aquifex aeolicus VF5] |
AE008691 | Thermoanaerobacter tengcongensis | 1. gi|41816370|gb|AAS11237.1| glycine reductase complex selenoprotein GrdA [Treponema denticola ATCC 35405] |
 |  | 2. gi|51857693|dbj|BAD41851.1| glycine reductase complex selenoprotein B [Symbiobacterium thermophilum IAM 14863] |
 |  | 3. gi|46914191|emb|CAG20971.1| putative selenophosphate synthase [Photobacterium profundum] |
AE014075 | Escherichia coli CFT073 | 1. gi|2983532|gb|AAC07107.1| formate dehydrogenase, alpha subunit [Aquifex aeolicus VF5] |
 |  | 2. gi|56130341|gb|AAV79847.1| formate dehydrogenase H [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] |
 |  | 3. gi|2983532|gb|AAC07107.1| formate dehydrogenase, alpha subunit [Aquifex aeolicus VF5] |
BA000007 | Escherichia coli O157H7 | 1. gi|56130341|gb|AAV79847.1| formate dehydrogenase H [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] |
 |  | 2. gi|2983532|gb|AAC07107.1| formate dehydrogenase, alpha subunit [Aquifex aeolicus VF5] |
 |  | 3. gi|2983532|gb|AAC07107.1| formate dehydrogenase, alpha subunit [Aquifex aeolicus VF5] |
U00096 | Escherichia coli K12 | 1. gi|5105267|dbj|BAA80580.1| 114 amino acid long hypothetical protein [ Aeropyrum pernix K1] |
 |  | 2. gi|2983532|gb|AAC07107.1| formate dehydrogenase, alpha subunit [Aquifex aeolicus VF5] |
 |  | 3. gi|56130341|gb|AAV79847.1| formate dehydrogenase H [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] |
 |  | 4. gi|2983532|gb|AAC07107.1| formate dehydrogenase, alpha subunit [Aquifex aeolicus VF5] |
AE014299 | Shewanella oneidensis | 1. gi|2983532|gb|AAC07107.1| formate dehydrogenase, alpha subunit [Aquifex aeolicus VF5] |
AE015451 | Pseudomonas putida KT2440 | 1. gi|2983532|gb|AAC07107.1| formate dehydrogenase, alpha subunit [Aquifex aeolicus VF5] |
AE004091 | Pseudomonas aeruginosa | 1. gi|2983532|gb|AAC07107.1| formate dehydrogenase, alpha subunit [Aquifex aeolicus VF5] |
AE016958 | Mycobacterium avium paratuberculosis | 1. gi|13880045|gb|AAK44759.1| hypothetical protein MT0536 [ Mycobacterium tuberculosis CDC1551] |
 |  | 2. gi|2983532|gb|AAC07107.1| formate dehydrogenase, alpha subunit [Aquifex aeolicus VF5] |
AE017042 | Yersinia pestis biovar Mediaevalis | 1. gi|2983532|gb|AAC07107.1| formate dehydrogenase, alpha subunit [Aquifex aeolicus VF5] |
AE009952 | Yersinia pestis KIM | 1. gi|2983532|gb|AAC07107.1| formate dehydrogenase, alpha subunit [Aquifex aeolicus VF5] |
AL590842 | Yersinia pestis CO92 | 1. gi|2983532|gb|AAC07107.1| formate dehydrogenase, alpha subunit [Aquifex aeolicus VF5] |
AE017180 | Geobacter sulfurreducens | 1. gi|19918170|gb|AAM07420.1| 4-carboxymuconolactone decarboxylase [Methanosarcina acetivorans str. C2A] |
 |  | 2. gi|21956737|gb|AAM83670.1|AE013608_5 glutaredoxin 3 [Yersinia pestis KIM] |
 |  | 3. gi|37201109|dbj|BAC96933.1| thiol-disulfide isomerase and thioredoxins [Vibrio vulnificus YJ016] |
 |  | 4. gi|2983532|gb|AAC07107.1| formate dehydrogenase, alpha subunit [Aquifex aeolicus VF5] |
 |  | 5. gi|34105000|gb|AAQ61356.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472]; gi|53758707|gb|AAU92998.1| HesB/YadR/YfhF family protein [Methylococcus capsulatus str. Bath]; |
 |  | 6. gi|46914191|emb|CAG20971.1| Putative selenophosphate synthase [Photobacterium profundum] |
 |  | 7. gi|32448022|emb|CAD77542.1| peroxiredoxin [Pirellula sp.] |
 |  | 8. gi|29605647|dbj|BAC69712.1 hypothetical protein [Streptomyces avermitilis MA-4680] (SelW) |
 |  | 9. gi|34482757|emb|CAE09757.1| sulfur transferase precursor [Wolinella succinogenes] |
AE017226 | Treponema denticola ATCC 35405 | 1. gi|51857694|dbj|BAD41852.1| glycine reductase complex selenoprotein A [Symbiobacterium thermophilum IAM 14863] |
 |  | 2. gi|51857693|dbj|BAD41851.1| glycine reductase complex selenoprotein B [Symbiobacterium thermophilum IAM 14863] |
 |  | 3. gi|56380162|dbj|BAD76070.1| glutathione peroxidase [Geobacillus kaustophilus HTA426] |
 |  | 4. gi|51857693|dbj|BAD41851.1| glycine reductase complex selenoprotein B [Symbiobacterium thermophilum IAM 14863] |
 |  | 5. gi|26108424|gb|AAN80626.1|AE016761_201 selenide, water dikinase [Escherichia coli CFT073] |
 |  | 6. gi|52209545|emb|CAH35498.1| thioredoxin 1 [Burkholderia pseudomallei K96243] |
AL111168 | Campylobacter jejuni | 1. gi|27362035|gb|AAO10941.1|AE016805_198 formate dehydrogenase, alpha subunit [Vibrio vulnificus CMCP6] |
 |  | 2. gi|54018125|dbj|BAD59495.1| hypothetical protein [Nocardia farcinica IFM 10152]; (SelW) |
AL513382 | Salmonella typhi | 1. gi|3868721|gb|AAD13462.1| selenopolypeptide subunit of formate dehydrogenase H; formate dehydrogenase H, selenopolypeptide subunit [Escherichia coli K12] |
 |  | 2. gi|2983532|gb|AAC07107.1| formate dehydrogenase, alpha subunit [Aquifex aeolicus VF5] |
AE006468 | Salmonella typhimurium LT2 | 1. gi|2983532|gb|AAC07107.1| formate dehydrogenase, alpha subunit [Aquifex aeolicus VF5] |
 |  | 2. gi|2983532|gb|AAC07107.1| formate dehydrogenase, alpha subunit [Aquifex aeolicus VF5] |
 |  | 3. gi|3868721|gb|AAD13462.1| selenopolypeptide subunit of formate dehydrogenase H; formate dehydrogenase H, selenopolypeptide subunit [Escherichia coli K12] |
BA000016 | Clostridium perfringens | 1. gi|28202985|gb|AAO35429.1| conserved protein [Clostridium tetani E88]; gi|20906561|gb|AAM31712.1| HesB protein [Methanosarcina mazei Goe1] |
 |  | 2. gi|46914191|emb|CAG20971.1| putative selenophosphate synthase [Photobacterium profundum] |
BX470251 | Photorhabdus luminescens | 1. gi|2983532|gb|AAC07107.1| formate dehydrogenase alpha subunit [Aquifex aeolicus VF5] |
BX571656 | Wolinella succinogenes | 1. gi|27362035|gb|AAO10941.1|AE016805_198 formate dehydrogenase, alpha subunit [Vibrio vulnificus CMCP6] |
L42023 | Haemophilus influenzae | 1. gi|2983532|gb|AAC07107.1| formate dehydrogenase, alpha subunit [Aquifex aeolicus VF5] |
 |  | 2. gi|26108424|gb|AAN80626.1|AE016761_201 selenide, water dikinase [Escherichia coli CFT073] |
CR354531 | Photobacterium profundum | 1. gi|58428447|gb|AAW77484.1| conserved hypothetical protein [ Xanthomonas oryzae pv. oryzae KACC10331] |
CR354532 | Photobacterium profundum | 1. gi|41816370|gb|AAS11237.1| glycine reductase complex selenoprotein GrdA [Treponema denticola ATCC 35405] |
 |  | 2. gi|51589698|emb|CAH21328.1| selenide, water dikinase [Yersinia pseudotuberculosis IP 32953] |
 |  | 3. gi|41816370|gb|AAS11237.1| glycine reductase complex selenoprotein GrdA [Treponema denticola ATCC 35405] |
 |  | 4. gi|41818450|gb|AAS12639.1| glycine reductase complex selenoprotein GrdB2 [Treponema denticola ATCC 35405] |
AE009439 | Methanopyrus kandleri (archaea) | 1. gi|2622673|gb|AAB86026.1| formate dehydrogenase, alpha subunit homolog [Methanothermobacter thermautotrophicus]; gi|2622681|gb|AAB86033.1| tungsten formylmethanofuran dehydrogenase, subunit B [Methanothermobacter thermautotrophicus] |
 |  | 2. gi|57160335|dbj|BAD86265.1| probable formate dehydrogenase, alpha subunit [Thermococcus kodakaraensis KOD1] |
 |  | 3. gi|33566318|emb|CAE37231.1| putative iron-sulfur binding protein [Bordetella parapertussis] |
 |  | 4. gi|44921146|emb|CAF30381.1| heterodisulfide reductase, subunit A [Methanococcus maripaludis] |
 |  | 5. gi|44921142|emb|CAF30377.1| coenzyme F420-non-reducing hydrogenase, subunit delta [Methanococcus maripaludis]; gi|2622243|gb|AAB85627.1| methyl viologen-reducing hydrogenase, delta subunit homolog FlpD [Methanothermobacter thermautotrophicus]; gi|20904385|gb|AAM29752.1| heterodisulfate reductase, subunit A [Methanosarcina mazei Goe1] |
 |  | 6. gi|45047811|emb|CAF30938.1| coenzyme F420-reducing hydrogenase subunit alpha [Methanococcus maripaludis] |
 |  | 7. gi|39576202|emb|CAE80367.1| selenide, water dikinase [Bdellovibrio bacteriovorus HD100] |
L77117 | Methanococcus jannaschii (archaea) | 1. gi|44921146|emb|CAF30381.1| heterodisulfide reductase subunit A [Methanococcus maripaludis] |
 |  | 2. gi|45047811|emb|CAF30938.1| coenzyme F420-reducing hydrogenase subunit alpha [Methanococcus maripaludis] |
 |  | 3. gi|50875900|emb|CAG35740.2| methyl-viologen-reducing hydrogenase, delta subunit [Desulfotalea psychrophila LSv54] |
 |  | 4. gi|2622240|gb|AAB85625.1| methyl viologen-reducing hydrogenase, delta subunit [Methanothermobacter thermautotrophicus]; gi|44921142|emb|CAF30377.1| coenzyme F420-non-reducing hydrogenase subunit delta [Methanococcus maripaludis] |
 |  | 5. gi|2622673|gb|AAB86026.1| formate dehydrogenase, alpha subunit homolog [Methanothermobacter thermautotrophicus]; gi|45048129|emb|CAF31247.1| tungsten containing formylmethanofuran dehydrogenase, subunit B [Methanococcus maripaludis] (overlaps with #4) |
 |  | 6. gi|26108424|gb|AAN80626.1|AE016761_201 selenide, water dikinase [Escherichia coli CFT073] |
 |  | 7. gi|53758707|gb|AAU92998.1| HesB/YadR/YfhF family protein [Methylococcus capsulatus str. Bath] |
 |  | 8. gi|45047727|emb|CAF30854.1| formate dehydrogenase, alpha subunit [Methanococcus maripaludis] |
BX950229 | Methanococcus maripaludis (archaea) | 1. gi|2622673|gb|AAB86026.1| formate dehydrogenase, alpha subunit homolog [Methanothermobacter thermautotrophicus]; gi|19886584|gb|AAM01476.1| Formylmethanofuran dehydrogenase subunit B [Methanopyrus kandleri AV19] |
 |  | 2. gi|2622673|gb|AAB86026.1| formate dehydrogenase, alpha subunit homolog [Methanothermobacter thermautotrophicus] |
 |  | 3. gi|2622240|gb|AAB85625.1| methyl viologen-reducing hydrogenase, delta subunit [Methanothermobacter thermautotrophicus]; gi|39981962|gb|AAR33424.1| heterodisulfide reductase subunit [Geobacter sulfurreducens PCA] |
 |  | 4. gi|2622673|gb|AAB86026.1| formate dehydrogenase, alpha subunit homolog [Methanothermobacter thermautotrophicus] |
 |  | 5. gi|2622673|gb|AAB86026.1| formate dehydrogenase, alpha subunit homolog [Methanothermobacter thermautotrophicus]; gi|19918286|gb|AAM07526.1| formylmethanofuran dehydrogenase, subunit B [Methanosarcina acetivorans str. C2A] |
 |  | 6. gi|19886593|gb|AAM01482.1| Heterodisulfide reductase, subunit A, polyferredoxin [Methanopyrus kandleri AV19] |