From: Tandem repeat copy-number variation in protein-coding regions of human genes
Term | GO id | Variants | Non-variants | Statistical tests | |||||
---|---|---|---|---|---|---|---|---|---|
 |  | Linked | Not linked | Linked | Not linked |  |  |  |  |
(a) Primary hypothesis | Â | Â | Â | Â | Â | Â | Â | Â | Â |
Defense response | GO:0006952 | 9 | 150 | 475 | 7,979 | Chi-squared test 0.98 | Logistic regression 0.88 | ||
(b) All level 4 | Â | Â | Â | Â | Â | Â | Â | Â | Â |
 |  |  |  |  |  | Fishers exact | Logistic regression | ||
 |  |  |  |  |  | Fishers exact | Bonferroni | Logistic regression | Bonferroni |
Most significant terms | Â | Â | Â | Â | Â | Â | Â | Â | Â |
Protein binding | GO:0005515 | 45 | 114 | 1,354 | 7,100 | <0.00001 | <0.0006 | <0.00001 | <0.0006 |
Morphogenesis | GO:0009653 | 28 | 131 | 783 | 7,671 | 0.001 | 0.064 | 0.001 | 0.064 |
Intracellular | GO:0005622 | 93 | 66 | 3,845 | 4,609 | 0.001 | 0.064 | 0.004 | 0.256 |
Transcription cofactor activity | GO:0003712 | 10 | 149 | 166 | 8,288 | 0.002 | 0.128 | <0.00001 | <0.0006 |
RNA polymerase II transcription factor activity | GO:0003702 | 9 | 150 | 150 | 8,304 | 0.003 | 0.192 | 0.001 | 0.064 |
Protein serine/threonine phosphatase complex | GO:0008287 | 3 | 156 | 19 | 8,435 | 0.007 | 0.448 | <0.00001 | <0.0006 |
Helicase activity | GO:0004386 | 6 | 153 | 93 | 8,361 | 0.01 | 0.64 | 0.007 | 0.448 |
Structural constituent of epidermis | GO:0030280 | 2 | 157 | 7 | 8,447 | 0.011 | 0.704 | 0.001 | 0.064 |
Regulation of physiological process | GO:0050791 | 37 | 122 | 1,339 | 7,115 | 0.016 | 1.024 | 0.014 | 0.896 |
Death | GO:0016265 | 11 | 148 | 272 | 8,182 | 0.02 | 1.28 | 0.01 | 0.64 |
Pattern specification | GO:0007389 | 2 | 157 | 17 | 8,437 | 0.047 | 3.008 | 0.013 | 0.832 |
Antigen binding | GO:0003823 | 2 | 157 | 18 | 8,436 | 0.052 | 3.328 | 0.021 | 1.344 |