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Table 3 SFP discovery in individual tissue types

From: Single-feature polymorphism discovery in the barley transcriptome

Tissue ALL COL CRO GEM LEA RAD ROO
Replicates (GP, MX) 18,18 3, 3 3, 3 3, 3 3, 3 3, 3 2, 4
Sensitivity 67% 52% 58% 63% 51% 62% 60%
False sequence polymorphism rate 40% 35% 34% 34% 34% 34% 35%
% variance explained 38% 30% 33% 37% 32% 31% 34%
  1. Replicates indicate the number of arrays from each genotype analyzed for a given tissue type. Sensitivity is a percentage of correctly predicted SFP (270; Table 2) from the number of known sequence polymorphisms (401; Table 2). False sequence polymorphism rate is the percentage of predicted SFP that were found not to contain a DNA base-pair change. The % variance explained is that from a linear model fit of genotype (-1:MX; 0: no polymorphism; 1:GP) versus SFP d-statistic.