Chromatin and siRNA pathways cooperate to maintain DNA methylation of small transposable elements in Arabidopsis

Table 1 Loci scored as CNG methylation targets in mutants on the random-PCR array

Genomic location*	Gene ID	TIGR designation					drm1
						drm1	drm2
			cmt3	kyp	ago4	drm2	cmt3
Random loci
1:14147723-14148423		Non-LTR retrotransposon family (LINE)	-	-			-
3:18799179-18799859	At3g50620	Intergenic	-	-			-
4:1813417-1814107		Mutator-like transposase family	-	-			-
2:8651310-8652034	At2g20020	Expressed protein	-		-
2:11049695-11050396	At2g25900	Zinc finger (CCCH-type) family protein				-	-
3:19989359-19990040	At3g53960	Proton-dependent oligopeptide transport	-
2:5627581-5628302		non-LTR retrotransposon family (LINE)		-
1:8273192-8273908	At1g23320	Alliinase family protein contains Pfam					-
1:22107946-22108642	At1g60020	Copia-like retrotransposon family					-
2:7532595-7533279	At2g17305	Hypothetical protein					-
2:13188318-13189035	At2g30970	Aspartate aminotransferase, mitochondrial				-

*Chromosome number:span of fragment in TIGR map April 2004. Dashes indicate loss of methylation and blank spaces indicate no significant change.

ISSN: 1474-760X