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Table 3 Predicted transcriptional regulators

From: Comprehensive de novo structure prediction in a systems-biology context for the archaea Halobacterium sp. NRC-1

Protein Cluster number CATH ID Z-score Confidence Other hits
Winged helix repressor DNA binding domain
VNG0389C 1 1.10.10.10 6.55 0.343 Weak FFAS hit to 1mzbA (ferric uptake gene regulator)
  2 1.10.10.10 7.40 0.4  
  4 1.10.10.10 6.76 0.357  
VNG2614H 1 1.10.10.10 6.64 0.313 PSI-BLAST to 1jgsA (winged helix, MarR)
  4 1.10.10.60 7.12 0.419  
  5 1.10.10.10 8.09 0.469  
VNG0768H 1 1.10.10.10 7.14 0.385 Not applicable
  9 1.10.10.10 8.09 0.481  
VNG2369C 1 1.10.10.10 7.14 0.323 Not applicable
  5 1.10.10.10 7.69 0.424  
VNG2641H 1 1.10.10.10 7.58 0.321 Not applicable
VNG1640H 1 1.10.10.10 7.86 0.34 Not applicable
VNG5156H 2 1.10.10.10 7.94 0.401 Weak FFAS hit to 1i1gA (LRP-like transcriptional regulator)
  3 1.10.10.10 9.36 0.502  
  4 1.10.10.10 8.55 0.444  
VNG5108H 14 1.10.10.10 8.04 0.388 Not applicable
VNG6047H 1 1.10.10.10 8.15 0.446 Weak FFAS hit to 1id3D (histone fold)
  3 1.10.10.60 8.69 0.524  
  14 1.10.10.10 10.03 0.58  
VNG0703H 1 1.10.10.10 8.17 0.439 PSI-BLAST to 1i1gA (LPR-like regulator)
  2 1.10.10.10 7.56 0.37  
  4 1.10.10.10 7.88 0.428  
  5 1.10.10.10 7.16 0.369  
  6 1.10.10.10 8.96 0.505  
VNG0462C 1 1.10.10.10 8.42 0.527 PSI-BLAST to 1lnwA (mexR repressor, winged helix fold) PSI-BLAST to ArsR
  2 1.10.10.10 9.77 0.621  
  4 1.10.10.10 7.66 0.489  
  5 1.10.10.10 8.57 0.545  
VNG2014H 14 1.10.10.10 8.72 0.379 Not applicable
VNG1229H 1 1.10.10.10 8.80 0.463 Not applicable
  4 1.10.10.10 7.95 0.339  
VNG0837H 2 1.10.10.10 9.02 0.476 Not applicable
  4 1.10.10.10 7.53 0.377  
  5 1.10.10.10 8.39 0.436  
VNG6479H 1 1.10.10.10 9.29 0.53 Not applicable
VNG0039H 1 1.10.10.10 9.36 0.478  
  2 1.10.10.10 8.60 0.438 Weak FFAS hit to 1mkmA (transcriptional regulator IclR, amino-terminal domain)
  3 1.10.10.10 9.28 0.438  
  5 1.10.10.10 9.96 0.522  
Homeodomain-like superfamily
VNG0293H 3 1.10.10.60 6.14 0.395 PSI-BLAST to 1i1gA (LPR-like regulator)
  4 1.10.10.10 7.01 0.427  
  5 1.10.10.10 6.63 0.393  
VNG2074H 11 1.10.10.60 7.09 0.354 Not applicable
  1 1.10.10.60 6.03 0.286  
VNG6251H 3 1.10.10.60 8.06 0.378 TMHMM predicts 1 TM helix
Cyclin A, domain 1 fold
VNG2133H 2 1.10.472.10 8.25 0.351 Not applicable
VNG6287H 15 1.10.472.10 9.14 0.306 Weak FFAS hit to 1smt-A (SMTB repressor)
  4 1.10.472.10 8.93 0.283  
  2 1.10.472.10 8.50 0.269  
VNG0511H 8 1.10.472.10 9.25 0.512 PSI-BLAST hit to 1i1gA
VNG1865H 8 1.10.472.10 9.55 0.365 Not applicable
  4 1.10.472.10 7.18 0.18