Name | IS-element | Method | Annotation |
---|---|---|---|
IS-element rich region 1 | |||
VNG5101H/6098H | ISH2 | Pfam | PF01402 CopG ribbon helix, regulates plasmid copy number |
VNG5102H/6099H | - | TMHMM | Membrane protein, unknown function |
VNG5104H/6101H | - | - | - |
VNG5105H/6102H | - | Meta-Server | Hit to 1dhx, Coper binding protein |
VNG5106H/6103H | - | TMHMM | Membrane protein, unknown function |
VNG5108H/6105H | - | Rosetta | Hit to 1d1A2, capsid protein/transcription factor |
VNG5109H/6106H | ISH8 | Pfam | PF01609, transposase DDE domain |
VNG5112H/6109H | - | Rosetta | Hit to 1dt9A1, translation initiation factor |
VNG5114H/6111H | ISH3 | - | - |
VNG5115H/6112H | - | Pfam | PF00589, phage integrase family |
VNG5116H/6113H | - | Meta-Server | Hit to 1d1qA, phosphotyrosine protein phosphatase |
VNG5118H/6115H | - | Rosetta | 1he8A3, serine/threonine protein phosphatase |
VNG5119H/6116H | - | Meta-Server | 1smtA, winged helix (DNA binding) in domain 1 |
VNG5120H/6117H | - | Rosetta | small protein, 2 hits to 1asu00 phage integrase (weak hits) |
VNG5122H/6119H | ISH7 | Pfam | PF01609 |
VNG5123H/6120H | ISH7 | TMHMM | membrane protein, unknown function |
VNG5124H/6121H | - | - | - |
IS-element rich region 2 | |||
VNG5040H | ISH8 | Pfam | PF01609 |
VNG5041H/5256H | - | Rosetta | - |
VNG5042H/5255H Domain 1 | ISH9 | Rosetta | Hit to 1ez3A0, 2 long helices, no function annotation (domain 1) |
VNG5042H/5255H Domain 2 | ISH9 | Pfam | PF01609 (domain 2) |
VNG5044H/5253H | ISH5 | Pfam | PF01609 |
VNG5045H/5252H | ISH11 (in ISH5) | Pfam | PF01609 |
VNG5047H/5250H | - | Rosetta | Hit to 1am3 (HIV capsid protein), 1.10.1200.30 |
VNG5048H/5249H | - | Rosetta | Hit to 1ais (cyclin-like fold/TBP fragment), 1.10.472.10 |
VNG5049H/5248H | - | Rosetta | Hit to 2ezh (transposase/transcription factor), 1.10.10.60 |
VNG5050H/5247H | - | Pfam | PF03551, PadR repressor |
tbpB | - | known | tata-box binding protein B |