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Figure 3 | Genome Biology

Figure 3

From: Comprehensive de novo structure prediction in a systems-biology context for the archaea Halobacterium sp. NRC-1

Figure 3

IS-element (insertion sequences) rich regions on the minichromosome. (a) Segment of Halobacterium genome corresponding to genes VNG5101H - sojD (and duplicate region VNG6098H - sojD). IS-elements are shown above as colored boxes. Open reading frames are indicated as red/pink (on 3' strand) or blue/sky-blue boxes (on 5' strand). (b) Top ranked Rosetta prediction for VNG6109H shown next to its closest match in the PDB, 1dt9A1 (translation initiation factor sub-domain). (c) Segment of Halobacterium genome corresponding to genes VNG5244H - VNG5256H (duplicated on the opposite strand elsewhere on the minichromosome, VNG5053H - VNG5041H). (d) Top ranked Rosetta prediction for VNG5049H shown next to its closest hit in the PDB, 2ezh. (e) Top ranked Rosetta prediction for VNG5047H shown next to its closest hit in the PDB, 1am3.

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