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Table 5 TXTGate profiling of clusters a, b, c, and d from Chaussabel and Sher [6] (GO vocabulary)

From: TXTGate: profiling gene groups with text-based information

Gene symbol Cluster terms in [6] Terms from TXTGate  
Cluster a LPL Lipoprotein   lipoprotein
  CD36L1 Density   lipas
  LDLR Cholesterol   ldl
   Lipid   ldl_receptor
   Adipose   cholesterol
     hdl
     scaveng_receptor
     high_densiti_lipoprotein
     low_densiti_lipoprotein_receptor
     low_densiti_lipoprotein
Cluster b UPA Invasive Collagenase metalloproteinas
  PLAUR Invasion Collagen matrix
  SERPIN Metastasis Matrix metalloendopeptidas
  MMP1 UPAR MMP collagenas
  MMP10 UPA Metalloproteinase extracellular_matrix
  MMP14 Plasminogen Molecule-1 alpha
  SPARC Urokinase-type Adhesion upar
   Urokinase Vascular plasminogen_activ
   Plasmin Endothelial interstiti
   Activator   invasion
Cluster c AMPD3 Adenosine   purinerg
  ADA A2A   adenosin
  ADORA2A A1   deaminas
  ADORA3 Antagonist   p2
  P2RX Agonist   p2x
  P2RX1 NM   p1
  P2RX7    agonist
     receptor
     adenosin_receptor
     ada
Cluster d IP10 Interferon   tumor_necrosi_factor
  MIP1A IFN-alpha   cytokin
  MIP1B IFN   induc
  IL8 Interferon-gamma   interferon
  STAT4 IFN-gamma   inflammatori
  IL12B Inducible   antigen
  TNFRSF9    lymphocyt_activ
  TNFSF9    stimul
  SLAM    chemokin
  TNFRSF5    monocyt
  CD83    
  1. Corresponding terms in Chaussabel and Sher [6] and TXTGate are in bold. TXTGate's profiles are comparably informative. Complete data can be found in Additional data file 2.