Skip to main content

Table 2 START-domain-containing proteins from Oryza sativa (L.) ssp. indica and japonica

From: START lipid/sterol-binding domains are amplified in plants and are predominantly associated with homeodomain transcription factors

indica sequence

japonica ortholog

japonica locus, ID

Other names

Structure

Size (aa)

START position

Chr.

Transmembrane segments

Rice EST/cDNA

Plant EST

Osi002227.2

NP_915741*

Os01w51311

OSTF1

HD ZLZ START

700*

206-430*

1†

-

Y (1)

-

  

Os01w95290

        

Osi014526.1

BAB92357

-

GL2

HD ZLZ START

779*

270-506*

1*

-

-

Y (1)

Osi007627.1

BAC77158

-

ROC5

HD ZLZ START

790*

294-533*

2†

-

Y (2)

Y (4)

Osi000127.7

CAE02251

-

-

HD ZLZ START

851*

309-583*

4*

-

Y (1)

Y (8)

Osi000666.5

CAE04753

-

ROC2

HD ZLZ START

781*

284-518*

4†

-

Y (2)

Y (14)

Osi017902.1

-

-

-

HD ZLZ START

616

231-471

6

1 (i30-52o)

Y (1)

Y (1)

Osi007245.1

-

-

-

HD ZLZ START

749

259-492

8

-

-

Y (15)

Osi010085.1

BAD01388

OSJNBb0075018

OCL3

HD ZLZ START

786*

248-497*

8†

-

Y (1)

-

Osi030338.1

BAB85750

-

ROC1

HD ZLZ START

784*

291-520*

8†

-

Y

-

Osi042017.1

-

-

-

HD ZLZ START

662

340-566

9

-

-

Y (1)

Osi009778.1

BAC77156

ID207863

ROC3

HD ZLZ START

879*

338-579*

10*

-

Y (1)

Y (4)

-

CAD41424

-

ROC4

HD ZLZ START

806*

309-550*

4*

-

Y (1)*

-

Osi000679.2

BAB92205

B1015E06

-

HD ZIP START

898*

170-413*

1*

-

-

Y (15)

Osi003709.4

AAR04340

-

-

HD ZIP START

839*

157-370*

3*

-

Y (2)

Y (35)

Osi007653.1

AAP54299

-

-

HD ZIP START

840*

159-372*

10*

-

Y (2)

Y (29)

Osi008720.4

-

ID213030

-

HD ZIP START

855*

170-383*

12†

-

Y

Y (38)

Osi006159.2

AAG43283

ID214133*

-

HD ZIP START

859*

173-386*

12†

-

Y (2)

Y (50)

Osi006334.4

BAD07818

OJ1435_F07

-

PH START DUF1336

804*

256-453*

2†

-

-

Y (1)

Osi000253.7

BAC22213

Os06w10955

-

PH START DUF1336

674*

210-328*

6†

-

-

Y (4)

Osi018163.1

AAP54082

ID208089*

-

PH START DUF1336

705*

209-381*

10†

-

Y (1)

-

-

AAP54296

-

-

PH START DUF1336

773*

204-398*

10*

-

-

Y (6)*

Osi003769.1

BAD09877

-

-

START DUF1336

763*

228-429*

8†

-

Y (2)

Y (2)

Osi002751.1

-

ID215312*

-

START

435*

125-312*

2

1 (o43-65i)

Y (1)

Y (5)

Osi002915.3

BAD07966

AP005304

-

START

419

106-327

2†

-

Y (2)

Y (23)

Osi005790.2

CAE01295

OSJNBa0020P07

-

START

400*

90-306*

4*

-

Y (2)

Y (24)

Osi007997.2‡

-

-

-

START

366

56-164

6

-

Y (2)

-

Osi009194.1

BAC83004

-

CP5

START

394*

90-300*

7*

2 (i21-43o362-384i)

Y (1)

Y (10)

Osi064970.1‡

BAC20079‡

Os07w00256‡

-

START

252*

71-173*

7†

-

Y (1)

-

Osi091856.1

-

-

-

START

199

30-191

-

-

-

-

  1. The sequence code for each indica protein is shown together with the accession number (GenBank), locus (MOsDB), and/or identification number (KOME rice full-length cDNA) of the putative japonica ortholog. The structure, total size in amino acids (aa), and position of the START domain are listed. Chr., chromosome number indicates map position. *The japonica ortholog was used for sequence analysis. †Information for both indica and japonica proteins was available for mapping. ‡Partial protein sequence having homology to HD-START proteins. Numbers of predicted transmembrane segments followed by the amino-acid positions, separated by 'i' if the loop is on the inside or 'o' if it is on the outside (in parentheses), are indicated. The availability of rice and/or plant EST and/or cDNA clones is indicated by a 'Y', and the number of independent matching cloned transcribed sequences is given in parentheses.
Back to article page

Genome Biology

ISSN: 1474-760X

Contact us