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Table 2 START-domain-containing proteins from Oryza sativa (L.) ssp. indica and japonica

From: START lipid/sterol-binding domains are amplified in plants and are predominantly associated with homeodomain transcription factors

indica sequence japonica ortholog japonica locus, ID Other names Structure Size (aa) START position Chr. Transmembrane segments Rice EST/cDNA Plant EST
Osi002227.2 NP_915741* Os01w51311 OSTF1 HD ZLZ START 700* 206-430* 1 - Y (1) -
   Os01w95290         
Osi014526.1 BAB92357 - GL2 HD ZLZ START 779* 270-506* 1* - - Y (1)
Osi007627.1 BAC77158 - ROC5 HD ZLZ START 790* 294-533* 2 - Y (2) Y (4)
Osi000127.7 CAE02251 - - HD ZLZ START 851* 309-583* 4* - Y (1) Y (8)
Osi000666.5 CAE04753 - ROC2 HD ZLZ START 781* 284-518* 4 - Y (2) Y (14)
Osi017902.1 - - - HD ZLZ START 616 231-471 6 1 (i30-52o) Y (1) Y (1)
Osi007245.1 - - - HD ZLZ START 749 259-492 8 - - Y (15)
Osi010085.1 BAD01388 OSJNBb0075018 OCL3 HD ZLZ START 786* 248-497* 8 - Y (1) -
Osi030338.1 BAB85750 - ROC1 HD ZLZ START 784* 291-520* 8 - Y -
Osi042017.1 - - - HD ZLZ START 662 340-566 9 - - Y (1)
Osi009778.1 BAC77156 ID207863 ROC3 HD ZLZ START 879* 338-579* 10* - Y (1) Y (4)
- CAD41424 - ROC4 HD ZLZ START 806* 309-550* 4* - Y (1)* -
Osi000679.2 BAB92205 B1015E06 - HD ZIP START 898* 170-413* 1* - - Y (15)
Osi003709.4 AAR04340 - - HD ZIP START 839* 157-370* 3* - Y (2) Y (35)
Osi007653.1 AAP54299 - - HD ZIP START 840* 159-372* 10* - Y (2) Y (29)
Osi008720.4 - ID213030 - HD ZIP START 855* 170-383* 12 - Y Y (38)
Osi006159.2 AAG43283 ID214133* - HD ZIP START 859* 173-386* 12 - Y (2) Y (50)
Osi006334.4 BAD07818 OJ1435_F07 - PH START DUF1336 804* 256-453* 2 - - Y (1)
Osi000253.7 BAC22213 Os06w10955 - PH START DUF1336 674* 210-328* 6 - - Y (4)
Osi018163.1 AAP54082 ID208089* - PH START DUF1336 705* 209-381* 10 - Y (1) -
- AAP54296 - - PH START DUF1336 773* 204-398* 10* - - Y (6)*
Osi003769.1 BAD09877 - - START DUF1336 763* 228-429* 8 - Y (2) Y (2)
Osi002751.1 - ID215312* - START 435* 125-312* 2 1 (o43-65i) Y (1) Y (5)
Osi002915.3 BAD07966 AP005304 - START 419 106-327 2 - Y (2) Y (23)
Osi005790.2 CAE01295 OSJNBa0020P07 - START 400* 90-306* 4* - Y (2) Y (24)
Osi007997.2 - - - START 366 56-164 6 - Y (2) -
Osi009194.1 BAC83004 - CP5 START 394* 90-300* 7* 2 (i21-43o362-384i) Y (1) Y (10)
Osi064970.1 BAC20079 Os07w00256 - START 252* 71-173* 7 - Y (1) -
Osi091856.1 - - - START 199 30-191 - - - -
  1. The sequence code for each indica protein is shown together with the accession number (GenBank), locus (MOsDB), and/or identification number (KOME rice full-length cDNA) of the putative japonica ortholog. The structure, total size in amino acids (aa), and position of the START domain are listed. Chr., chromosome number indicates map position. *The japonica ortholog was used for sequence analysis. Information for both indica and japonica proteins was available for mapping. Partial protein sequence having homology to HD-START proteins. Numbers of predicted transmembrane segments followed by the amino-acid positions, separated by 'i' if the loop is on the inside or 'o' if it is on the outside (in parentheses), are indicated. The availability of rice and/or plant EST and/or cDNA clones is indicated by a 'Y', and the number of independent matching cloned transcribed sequences is given in parentheses.