Details of overlaps between predicted co-regulated genes from proteasome-related complexes. Complexes are displayed as ellipses, with individual complexes identified by the prefix TAP or HMS followed by a number (see Figure 3 legend for details). The numbers in parentheses are the number of genes in the predicted co-regulated set for the complex and the total number of genes in the complex, respectively; the ratio represents the proportion of the components of the complex that is predicted to be co-regulated (see text and Figure 6). The set of predicted co-regulated genes in each complex is enclosed in a rounded frame of the same color as the ellipse of the corresponding complex. Two large rectangular frames enclose the subset of co-regulated genes that code for the components of the proteasome core particle (left) and the proteasome regulatory particle (right).