Skip to main content

Advertisement

Table 1 Species used in the current work and their accession numbers

From: Comparative genomics of gene-family size in closely related bacteria

Species Accession number Genome size (bp)
Agrobacterium tumefaciens str. C58 (Cereon) NC_003062 2,841,581
Agrobacterium tumefaciens str. C58 (U. Washington) NC_003304 2,841,490
Aquifex aeolicus VF5 NC_000918 1,551,335
Bacillus anthracis str. Ames NC_003997 5,227,293
Bacillus cereus ATCC 14579 NC_004722 5,411,809
Bacillus halodurans NC_002570 4,202,353
Bacillus subtilis subsp. subtilis str. 168 NC_000964 4,214,814
Bacteroides thetaiotaomicron VPI-5482 NC_004663 6,260,361
Bifidobacterium longum NCC2705 NC_004307 2,256,646
Bordetella bronchiseptica NC_002927 5,339,179
Bordetella parapertussis NC_002928 4,773,551
Bordetella pertussis NC_002929 4,086,189
Borrelia burgdorferi B31 NC_001318 910,724
Bradyrhizobium japonicum USDA 110 NC_004463 9,105,828
Brucella melitensis 16M NC_003317 2,117,144
Brucella suis 1330 NC_004310 2,107,792
Buchnera aphidicola str. APS (Acyrthosiphon pisum) NC_002528 640,681
Buchnera aphidicola str. Bp (Baizongia pistaciae) NC_004545 615,980
Buchnera aphidicola str. Sg (Schizaphis graminum) NC_004061 641,454
Campylobacter jejuni subsp. jejuni NCTC 11168 NC_002163 1,641,481
Candidatus Blochmannia floridanus NC_005061 705,557
Caulobacter crescentus CB15 NC_002696 4,016,947
Chlamydia muridarum NC_002620 1,072,950
Chlamydia trachomatis NC_000117 1,042,519
Chlamydophila caviae GPIC NC_003361 1,173,390
Chlamydophila pneumoniae AR39 NC_002179 1,229,858
Chlamydophila pneumoniae CWL029 NC_000922 1,230,230
Chlamydophila pneumoniae J138 NC_002491 1,226,565
Chlamydophila pneumoniae TW-183 NC_005043 1,225,935
Chlorobium tepidum TLS NC_002932 2,154,946
Chromobacterium violaceum ATCC 12472 NC_005085 4,751,080
Clostridium acetobutylicum NC_003030 3,940,880
Clostridium perfringens str. 13 NC_003366 3,031,430
Clostridium tetani E88 NC_004557 2,799,251
Corynebacterium diphtheriae NC_002935 2,488,635
Corynebacterium efficiens YS-314 NC_004369 3,147,090
Corynebacterium glutamicum ATCC 13032 NC_003450 3,309,401
Coxiella burnetii RSA 493 NC_002971 1,995,275
Deinococcus radiodurans NC_001263 2,648,638
Enterococcus faecalis V583 NC_004668 3,218,031
Escherichia coli CFT073 NC_004431 5,231,428
Escherichia coli K12 NC_000913 4,639,221
Escherichia coli O157:H7 NC_002695 5,498,450
Escherichia coli O157:H7 EDL933 NC_002655 5,528,445
Fusobacterium nucleatum subsp. nucleatum ATCC 25586 NC_003454 2,174,500
Gloeobacter violaceus NC_005125 4,659,019
Haemophilus ducreyi 35000HP NC_002940 1,698,955
Haemophilus influenzae Rd NC_000907 1,830,138
Helicobacter hepaticus ATCC 51449 NC_004917 1,799,146
Helicobacter pylori 26695 NC_000915 1,667,867
Helicobacter pylori J99 NC_000921 1,643,831
Lactobacillus plantarum WCFS1 NC_004567 3,308,274
Lactococcus lactis subsp. lactis NC_002662 2,365,589
Leptospira interrogans serovar lai str. 56601 NC_004342 4,332,241
Listeria innocua NC_003212 3,011,208
Listeria monocytogenes EGD-e NC_003210 2,944,528
Mesorhizobium loti NC_002678 7,036,074
Mycobacterium bovis subsp. bovis AF2122/97 NC_002945 4,345,492
Mycobacterium leprae NC_002677 3,268,203
Mycobacterium tuberculosis CDC1551 NC_002755 4,403,836
Mycobacterium tuberculosis H37Rv NC_000962 4,411,529
Mycoplasma gallisepticum R NC_004829 996,422
Mycoplasma genitalium NC_000908 580,074
Mycoplasma penetrans NC_004432 1,358,633
Mycoplasma pneumoniae NC_000912 816,394
Mycoplasma pulmonis NC_002771 963,879
Neisseria meningitidis MC58 NC_003112 2,272,351
Neisseria meningitidis Z2491 NC_003116 2,184,406
Nitrosomonas europaea ATCC 19718 NC_004757 2,812,094
Nostoc sp. PCC 7120 NC_003272 6,413,771
Oceanobacillus iheyensis HTE831 NC_004193 3,630,528
Pasteurella multocida NC_002663 2,257,487
Photorhabdus luminescens subsp. laumondii TTO1 NC_005126 5,688,987
Pirellula sp. NC_005027 7,145,576
Porphyromonas gingivalis W83 NC_002950 2,343,476
Prochlorococcus marinus str. MIT 9313 NC_005071 2,410,873
Prochlorococcus marinus subsp. marinus str. CCMP1375 NC_005042 1,751,080
Prochlorococcus marinus subsp. pastoris str. CCMP1378 NC_005072 1,657,990
Pseudomonas aeruginosa PA01 NC_002516 6,264,403
Pseudomonas putida KT2440 NC_002947 6,181,863
Pseudomonas syringae pv. tomato str. DC3000 NC_004578 6,397,126
Ralstonia solanacearum NC_003295 3,716,413
Rickettsia conorii NC_003103 1,268,755
Rickettsia prowazekii NC_000963 1,111,523
Salmonella enterica subsp. enterica serovar Typhi NC_003198 4,809,037
Salmonella enterica subsp. enterica serovar Typhi Ty2 NC_004631 4,791,961
Salmonella typhimurium LT2 NC_003197 4,857,432
Shewanella oneidensis MR-1 NC_004347 4,969,803
Shigella flexneri 2a str. 2457T NC_004741 4,599,354
Shigella flexneri 2a str. 301 NC_004337 4,607,203
Sinorhizobium meliloti NC_003047 3,654,135
Staphylococcus aureus subsp. aureus MW2 NC_003923 2,820,462
Staphylococcus aureus subsp. aureus Mu50 NC_002758 2,878,040
Staphylococcus aureus subsp. aureus N315 NC_002745 2,814,816
Staphylococcus epidermidis ATCC 12228 NC_004461 2,499,279
Streptococcus agalactiae 2603V/R NC_004116 2,160,267
Streptococcus agalactiae NEM316 NC_004368 211,485
Streptococcus mutans UA159 NC_004350 203,0921
Streptococcus pneumoniae R6 NC_003098 2,038,615
Streptococcus pneumoniae TIGR4 NC_003028 2,160,837
Streptococcus pyogenes M1 GAS NC_002737 1,852,441
Streptococcus pyogenes MGAS315 NC_004070 1,900,521
Streptococcus pyogenes MGAS8232 NC_003485 1,895,017
Streptococcus pyogenes SSI-1 NC_004606 1,894,275
Streptomyces avermitilis MA-4680 NC_003155 9,025,608
Streptomyces coelicolor A3(2) NC_003888 8,667,507
Synechococcus sp. WH 8102 NC_005070 2,434,428
Synechocystis sp. PCC 6803 NC_000911 3,573,470
Thermoanaerobacter tengcongensis NC_003869 2,689,445
Thermosynechococcus elongates BP-1 NC_004113 2,593,857
Thermotoga maritima NC_000853 1,860,725
Treponema pallidum NC_000919 1,138,011
Tropheryma whipplei TW08/27 NC_004551 925,938
Tropheryma whipplei str. Twist NC_004572 927,303
Ureaplasma urealyticum NC_002162 751,719
Vibrio cholerae NC_002505 2,961,149
Vibrio parahaemolyticus RIMD 2210633 NC_004603 3,288,558
Vibrio vulnificus CMCP6 NC_004459 3,281,945
Vibrio vulnificus YJ016 NC_005139 3,354,505
Wigglesworthia glossinidia (from Glossina brevipalpis) NC_004344 697,724
Wolinella succinogenes NC_005090 2,110,355
Xanthomonas axonopodis pv. citri str. 306 NC_003919 5,175,554
Xanthomonas campestris pv. campestris str. ATCC 33913 NC_003902 5,076,188
Xylella fastidiosa 9a5c NC_002488 2,679,306
Xylella fastidiosa Temecula1 NC_004556 2,519,802
Yersinia pestis CO92 NC_003143 4,653,728
Yersinia pestis KIM NC_004088 4,600,755