Table 1 NMD-candidate SWISS-PROT isoforms

Accession number

SWISS-PROT ID

Isoform name

Gene name(s)

cDNA/mRNA

P78314

3BP2_HUMAN

SHORT

SH3BP2; 3BP2; RES4-23

AB000463

P05023

A1A1_HUMAN

SHORT

ATP1A1

U16798

Q9NSE7

ABCD_HUMAN

2

ABCC13

AF418600

3

NM_138726

O75078

AD11_HUMAN

SHORT

ADAM11; MDC

NM_021612

Q9P0K1

AD22_HUMAN

2

ADAM22; MDC2

NM_021722

Q9Y6N9

AI75_HUMAN

3

USH1C; AIE75

AF039699

Q92667

AKP1_HUMAN

2

AKAP1; AKAP149

NM_139275

P20594

ANPB_HUMAN

SHORT

NPR2; ANPRB

NM_000907

P18847

ATF3_HUMAN

2

ATF3

NM_004024

Q9H6X2

ATR1_HUMAN

MAJOR

ANTXR1; ATR; TEM8

NM_032208

Q9NY97

B3G7_HUMAN

2

B3GNT1; B3GALT7

AF288209

Q9HB09

BC12_HUMAN

2

BCL2L12; BPR

NM_052842

P13497

BMP1_HUMAN

BMP1 6

BMP1

NM_006130

BMP1 5

NM_006131

BMP1 4

NM_006132

Q9HB55

C343_HUMAN

4

CYP3A43

AF280111

P01258

CAL0_HUMAN

2

CALCA; CALC1

M64486

Q9HC96

CANA_HUMAN

B

CAPN10; KIAA1845

NM_023084

D

NM_023086

E

NM_023087

F

NM_023088

P28907

CD38_HUMAN

2

CD38

D84277

Q08722

CD47_HUMAN

OA3 305

CD47

BC037306

O15519

CFLA_HUMAN

9

CFLAR; CLARP; MRIT; CASH

AF009617

Q9H2X0

CHRD_HUMAN

3

CHRD

AF209930

4

AF283325

O43526

CIQ2_HUMAN

3

KCNQ2

NM_004518

Q9NYG8

CIW4_HUMAN

2

KCNK4; TRAAK

NM_016611

P49759

CLK1_HUMAN

SHORT

CLK1; CLK

L29222

P49760

CLK2_HUMAN

SHORT

CLK2

NM_001291

P49761

CLK3_HUMAN

2

CLK3

NM_001292

Q13286

CLN3_HUMAN

4

CLN3; BTS

AF077963

Q99788

CML1_HUMAN

MAJOR

CMKLR1; DEZ; CHEMR23

U79526

P27815

CN4A_HUMAN

2

PDE4A

AF069491

Q9H9E3

COG4_HUMAN

2

COG4

AB088369

Q9Y215

COLQ_HUMAN

VII

COLQ

NM_080543

Q96SM3

CPXM_HUMAN

2

CPXM

BC032692

Q9BZJ0

CRN1_HUMAN

4

CRNKL1; CRN

AF318304

5

AF318305

Q9BUV8

CT24_HUMAN

4

C20ORF24

BC004446

P57077

CU07_HUMAN

B

C21ORF7

AF269162

C

AF269163

Q9NVD3

CU18_HUMAN

B

C21ORF18

AF391112

Q92879

CUG1_HUMAN

MAJOR

CUGBP1; BRUNOL2; CUGBP; NAB50

AF248648

O76075

DFFB_HUMAN

BETA

DFFB; DFF2; DFF40; CAD

AB028911

GAMMA

AB028912

DELTA

AB028913

P25686

DJB2_HUMAN

3

DNAJB2; HSJ1; HSPF3

NM_006736

MAJOR

S37374

Q09013

DMK_HUMAN

11

DMPK; MDPK

L19268

Q9NYP3

DONS_HUMAN

2

DONSON; C21ORF60

NM_145794

3

NM_145795

Q9NY33

DPP3_HUMAN

2

DPP3

NM_130443

O60941

DTNB_HUMAN

3

DTNB

NM_033147

P29320

EPA3_HUMAN

MAJOR

EPHA3; ETK1; ETK; HEK

NM_005233

O75616

ERAL_HUMAN

HERA B

ERAL1; HERA

AF082658

Q92731

ESR2_HUMAN

3

ESR2; NR3A2; ESTRB

BC024181

O00507

FAFY_HUMAN

SHORT

USP9Y; USP10; DFFRY

Y13619

P24071

FCAR_HUMAN

B DELTA S2

FCAR; CD89

NM_133280

P41439

FOL3_HUMAN

SHORT

FOLR3

Z32633

O95954

FTCD_HUMAN

E

FTCD

AF289024

P59103

G72_HUMAN

MAJOR

G72

AY138546

2

NM_172370

Q9UBA6

G8_HUMAN

MAJOR

C6ORF48; G8

NM_016947

Q9UBS5

GBR1_HUMAN

1E

GABBR1

NM_021905

Q9BSJ2

GCP2_HUMAN

2

TUBGCP2; GCP2

BC005011

P56159

GDNR_HUMAN

2

GFRA1; GDNFRA; TRNR1; RETL1

NM_145793

O94925

GLSK_HUMAN

GAC

GLS; KIAA0838

AF158555

Q969S8

HD10_HUMAN

4

HDAC10

AL022328

Q30201

HFE_HUMAN

MAJOR

HFE; HLAH

NM_000410

Q9NRM6

I17S_HUMAN

2

IL17RB; IL17BR; EVI27

NM_172234

Q14790

ICE8_HUMAN

7

CASP8; MCH5

NM_033357

Q92851

ICEA_HUMAN

B

CASP10; MCH4

NM_001230

C

NM_032976

Q92985

IRF7_HUMAN

C

IRF7

NM_004030

Q01638

IRL1_HUMAN

C

IL1RL1; ST2; T1; DER4

NM_173459

O14713

ITP1_HUMAN

MAJOR

ITGB1BP1; ICAP1

NM_004763

2

NM_022334

Q9HCP0

KC11_HUMAN

1S

CSNK1G1

NM_022048

P20151

KLK2_HUMAN

3

KLK2

AF188745

Q9H2R5

KLKF_HUMAN

2

KLK15

NM_023006

Q9UJU2

LEF1_HUMAN

B

LEF1

AF294627

P19256

LFA3_HUMAN

SHORT

CD58; LFA3

X06296

P53667

LIK1_HUMAN

3

LIMK1; LIMK

NM_016735

Q99698

LYST_HUMAN

MAJOR

CHS1; LYST; CHS

NM_000081

P49641

M2A2_HUMAN

SHORT

MAN2A2; MANA2X

NM_006122

O95405

MADI_HUMAN

2

MADHIP; SARA

NM_007324

P11137

MAP2_HUMAN

MAJOR

MAP2

NM_002374

MAP2C

NM_031845

P27816

MAP4_HUMAN

2

MAP4

BC015149

P25912

MAX_HUMAN

3

MAX

NM_145113

Q15759

MK11_HUMAN

BETA 2

MAPK11; PRKM11; SAPK2

NM_002751

O15438

MRP3_HUMAN

3A

ABCC3; CMOAT2; MRP3; MLP2

NM_020037

3B

NM_020038

P21757

MSRE_HUMAN

II

MSR1

NM_002445

Q9H1B4

NXF5_HUMAN

MAJOR

NXF5; TAPL1

NM_032946

B

NM_033152

C

NM_033153

D

NM_033154

E

NM_033155

Q96QS1

PHMX_HUMAN

5

PHEMX; TSSC6

NM_139023

4

NM_139024

O14829

PPE1_HUMAN

2

PPEF1; PPEF; PPP7C

NM_152225

Q9UMR5

PPT2_HUMAN

2

PPT2

NM_138934

Q9NQW5

PRD7_HUMAN

MAJOR

PRDM7; PFM4

NM_052996

O14818

PSA7_HUMAN

4

PSMA7

NM_152255

P55036

PSD4_HUMAN

RPN10E

PSMD4; MCB1

NM_153822

P49768

PSN1_HUMAN

I 374

PSEN1; PSNL1; AD3; PS1

NM_007319

P23468

PTPD_HUMAN

MAJOR

PTPRD

NM_002839

O75771

R51D_HUMAN

2

RAD51L3; RAD51D

NM_133627

Q93062

RBMS_HUMAN

MAJOR

RBPMS

NM_006867

P78563

RED1_HUMAN

MAJOR

ADARB1; RED1; DRADA2

NM_015833

O15126

SCA1_HUMAN

2

SCAMP1; SCAMP

NM_052822

Q13243

SFR5_HUMAN

SRP40 2

SFRS5; SRP40; HRS

NM_006925

O60902

SHX2_HUMAN

MAJOR

SHOX2; SHOT; OG12X

NM_006884

Q13425

SNB2_HUMAN

2

SNTB2; SNT2B2

NM_130845

Q9Y5W8

SNXD_HUMAN

2

SNX13; KIAA0713

NM_015132

P18583

SON_HUMAN

E

SON; NREBP; DBP5; C21ORF50; KIAA1019

NM_058183

C

NM_138926

Q15528

SUR5_HUMAN

SURF5A

SURF5; SURF-5

NM_006752

O14763

T10B_HUMAN

MAJOR

TNFRSF10B; DR5; TRAILR2; TRICK2; KILLER; ZTNFR9

NM_003842

SHORT

NM_147187

Q9BZY9

TM31_HUMAN

BETA

TRIM31

NM_052816

P25445

TNR6_HUMAN

4

TNFRSF6; APT1; FAS; FAS1

NM_152873

5

NM_152875

3

NM_152876

2

NM_152877

P00750

TPA_HUMAN

SHORT

PLAT

NM_000931

Q93038

TR12_HUMAN

12

TNFRSF25; TNFRSF12; WSL1; WSL; APO3; DR3; DDR3

NM_148968

4

NM_148969

3

NM_148971

5

NM_148972

6

NM_148973

7

NM_148974

Q9BYM8

U7I3_HUMAN

4

UBCE7IP3; C20ORF18; XAP4

NM_031227

2

NM_031228

P58418

USH3_HUMAN

B

USH3A

NM_174880

Q9NP71

WS14_HUMAN

5

WBSCR14; MIO

NM_032994

Q02040

XE7_HUMAN

SHORT

(XE7X; XE7; DXYS155E); (XE7Y; XE7; DXYS155E)

NM_005088

Q9Y493

ZAN_HUMAN

1

ZAN

NM_173055

2

NM_173056

4

NM_173057

5

NM_173058