From: Estimating genomic coexpression networks using first-order conditional independence
Pathway | Number of genes(in KEGG) | Size of largest coherent subnetwork(s) |
---|---|---|
Carbohydrate metabolism | Â | Â |
Glycolysis/gluconeogenesis | 41 (47) | 18* |
Citrate cycle (TCA cycle) | 27 (30) | 18* |
Pentose phosphate pathway | 20 (27) | 6* |
Fructose and mannose metabolism | 39 (46) | 4 |
Galactose metabolism | 25 (30) | 8* |
Ascorbate and aldarate metabolism | 11 (13) | 3 |
Pyruvate metabolism | 32 (34) | 8* |
Glyoxylate and dicarboxylate metabolism | 12 (14) | 6* |
Butanoate metabolism | 27 (30) | 7* |
Energy metabolism | Â | Â |
Oxidative phosphorylation | 53 (76) | 31* |
ATP synthesis | 21 (30) | 7* |
Nitrogen metabolism | 24 (27) | 3 |
Lipid metabolism | Â | Â |
Fatty acid metabolism | 13 (17) | 3 |
Nucleotide metabolism | Â | Â |
Purine metabolism | 87 (99) | 34* |
Pyrimidine metabolism | 72 (80) | 15* |
Nucleotide sugars metabolism | 11 (14) | 2 |
Amino acid metabolism | Â | Â |
Glutamate metabolism | 25 (27) | 3 |
Alanine and aspartate metabolism | 26 (27) | 7* |
Glycine, serine and threonine metabolism | 36 (42) | 7* |
Methionine metabolism | 13 (14) | 6* |
Valine, leucine and isoleucine biosynthesis | 15 (16) | 10* |
Lysine biosynthesis | 16 (20) | 3 |
Lysine degradation | 26 (30) | 4 |
Arginine and proline metabolism | 20 (24) | 5* |
Histidine metabolism | 20 (25) | 3 |
Tyrosine metabolism | 27 (34) | 2 |
Tryptophan metabolism | 20 (25) | 2 |
Phenylalanine, tyrosine and tryptophan biosynthesis | 21 (23) | 6* |
Metabolism of complex carbohydrates | Â | Â |
Starch and sucrose metabolism | 118 (139) | 29 |
N-Glycans biosynthesis | 43 (49) | 13* |
O-Glycans biosynthesis | 18 (20) | 2 |
Aminosugars metabolism | 16 (20) | 2 |
Keratan sulfate biosynthesis | 18 (20) | 2 |
Metabolism of complex lipids | Â | Â |
Glycerolipid metabolism | 56 (68) | 12* |
Inositol phosphate metabolism | 87 (103) | 10 |
Sphingophospholipid biosynthesis | 101 (118) | 11 |
Metabolism of cofactors and vitamins | Â | Â |
Vitamin B6 metabolism | 11 (14) | 2 |
Folate biosynthesis | 14 (17) | 1 |