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Table 11 Summary of predicted regulatory sites in δ-proteobacteria

From: Reconstruction of regulatory and metabolic pathways in metal-reducing δ-proteobacteria

Regulator Regulon Consensus Genomes
BirA Biotin biosynthesis TTGTAAACC-[N 14/15 ]-GGTTTACAA DD, DV, GM, GS, DA, DP
RFN riboswitch Riboflavin biosynthesis see Additional data files DP
THI riboswitch Thiamin biosynthesis see Additional data files DD, DV, GM, GS, DA, DP
B12 riboswitch Cobalamin biosynthsis and transport see Additional data files DD, DV, GM, GS, DA, DP
S-box riboswitch Methionine biosynthesis see Additional data files GM, GS, DA
LysX Lysine biosynthesis and transport GTgGTaCTnnnnAGTACCAC DD, DV
Fur Iron uptake and metabolism GATAATGATnATCATTATC DD, DV, GM, GS, DA
NikR Nickel uptake and metabolism GTGTTAC-[N 13/14 ]-GTAACAC DD, DV, GM, GS, DA, DP
Zur Zinc uptake ATGCAACnnnGTTGCAT DD, DV
   TAAATCGTAATnATTACGATTTA GS
ModE Molybdate uptake and metabolism cgGTCACg-[N 14 ]-cGTGACCg DD, DV
   atCGnTATATA-[N 6 ]-TATATAnCGat GS
PerR Peroxide stress response AwnAGnAAtngTTnCTnwT DD, DV
   TtnCgnnTTnAAnncGnAA DA, GS
   AatTGnnATnnnATnnCAatt GM, GS-2
   GtTAATgATnATcATTAaC DP
   GgnnTTGnCAAnncC DA-2
HrcA Heat-shock response TTAGCACTC-[N 9 ]-GAGTGCTAA DD, DV, GM, GS, DA
Sigma-32 Heat-shock response CTTGAAA-[N 11/16 ]-CCCCAT DD, DV, GM, GS, DA, DP
CooA CO dehydrogenase TGTCGGCnnGCCGACA DD, DV
HcpR Sulfate reduction and energy metabolism (prismanes) TTGTGAnnnnnnTCACAA DD, DV
   atTTGAccnnggTCAAat DA, DP
  1. DV (Desulfovibrio vulgaris); DD (Desulfovibrio desulfuricans G20); GM (Geobacter metallireducens); GS (Geobacter sulfurreducens PCA); DA (Desulfuromonas species); DP (Desulfotalea psychrophila). Lower case letters represent positions that do not conform to the consensus sequence.