Table 11 Summary of predicted regulatory sites in δ-proteobacteria
From: Reconstruction of regulatory and metabolic pathways in metal-reducing δ-proteobacteria
Regulator | Regulon | Consensus | Genomes |
|---|---|---|---|
BirA | Biotin biosynthesis | TTGTAAACC-[N 14/15 ]-GGTTTACAA | DD, DV, GM, GS, DA, DP |
RFN riboswitch | Riboflavin biosynthesis | see Additional data files | DP |
THI riboswitch | Thiamin biosynthesis | see Additional data files | DD, DV, GM, GS, DA, DP |
B12 riboswitch | Cobalamin biosynthsis and transport | see Additional data files | DD, DV, GM, GS, DA, DP |
S-box riboswitch | Methionine biosynthesis | see Additional data files | GM, GS, DA |
LysX | Lysine biosynthesis and transport | GTgGTaCTnnnnAGTACCAC | DD, DV |
Fur | Iron uptake and metabolism | GATAATGATnATCATTATC | DD, DV, GM, GS, DA |
NikR | Nickel uptake and metabolism | GTGTTAC-[N 13/14 ]-GTAACAC | DD, DV, GM, GS, DA, DP |
Zur | Zinc uptake | ATGCAACnnnGTTGCAT | DD, DV |
TAAATCGTAATnATTACGATTTA | GS | ||
ModE | Molybdate uptake and metabolism | cgGTCACg-[N 14 ]-cGTGACCg | DD, DV |
atCGnTATATA-[N 6 ]-TATATAnCGat | GS | ||
PerR | Peroxide stress response | AwnAGnAAtngTTnCTnwT | DD, DV |
TtnCgnnTTnAAnncGnAA | DA, GS | ||
AatTGnnATnnnATnnCAatt | GM, GS-2 | ||
GtTAATgATnATcATTAaC | DP | ||
GgnnTTGnCAAnncC | DA-2 | ||
HrcA | Heat-shock response | TTAGCACTC-[N 9 ]-GAGTGCTAA | DD, DV, GM, GS, DA |
Sigma-32 | Heat-shock response | CTTGAAA-[N 11/16 ]-CCCCAT | DD, DV, GM, GS, DA, DP |
CooA | CO dehydrogenase | TGTCGGCnnGCCGACA | DD, DV |
HcpR | Sulfate reduction and energy metabolism (prismanes) | TTGTGAnnnnnnTCACAA | DD, DV |
atTTGAccnnggTCAAat | DA, DP |