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Table 1 Candidate binding sites for the biotin repressor BirA

From: Reconstruction of regulatory and metabolic pathways in metal-reducing δ-proteobacteria

Gene   Site Position* Score
Desulfuromonas sp.
387978 bioW aTGTcAACC-[N 14 ]-GGTTgACAg -63 8.61
390011 bioB acGTcAACC-[N 14 ]-GGTTgACAA -94 8.13
Geobacter sulfurreducens PCA
381880 bioB TTGTcAACC-[N 14 ]-aGTTgACAA -78 8.50
382941 bioF TTGTcAACC-[N 14 ]-GGTTgACgA -182 8.29
Geobacter metallireducens
377241 bioB TTGTtAACC-[N 14 ]-aGTTgACAA -76 7.81
377542 bioF TTGTcAACC-[N 14 ]-GGTTgACgA -64 8.29
Desulfovibrio vulgaris
208055 bioB TTGTAAACC-[N 15 ]-cGTTgACAg 6 8.39
Desulfovibrio desulfuricans G20
394249 bioB TTGTAAACC-[N 15 ]-aGTTgACAA -119 8.60
Desulfotalea psychrophila
425025 bioB TTGTAAAtt-[N 15 ]-ccaTTACAg 233 6.19
  1. *Position relative to the start of translation. Lower case letters represent positions that do not conform to the consensus sequence.