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Table 2 A. thaliana LTR retroelements by chromosome

From: Genomic neighborhoods for Arabidopsisretrotransposons: a role for targeted integration in the distribution of the Metaviridae

  Chromosome 1 30,080,809 nucleotides Chromosome 2 19,643,621 nucleotides Chromosome 3 23,465,812 nucleotides Chromosome 4 17,549,528 nucleotides Chromosome 5 26,689,408 nucleotides Total 117,429,178 nucleotides
Pseudoviridae       
RT only 21 19 16 10 16 82
Complete elements 48 42 47 35 38 210
   Nucleotides 239,675 211,083 285,207 185,127 199,386 1,120,478
   Percentage of total nucleotides 0.88% 1.24% 1.34% 1.21% 0.96% 1.1%
Solo LTRs 84 100 125 89 87 485
   Nucleotides 16,516 19,275 23,906 15,500 15,248 90,445
   Percentage of total nucleotides 0.13% 0.16% 0.18% 0.15% 0.13% 0.15%
Metaviridae       
RT only 16 30 41 23 32 142
Complete elements 37 34 45 18 32 166
   Nucleotides 309,690 319,802 375,703 161,352 319,535 1,486,082
   Percentage of total nucleotides 1.23% 2.82% 2.22% 1.40% 1.59% 1.74%
Solo LTRs 435 500 928 360 560 2,783
   Nucleotides 228,115 257,810 326,484 179,500 262,187 1,254,096
   Percentage of total nucleotides 1.15% 1.74% 1.71% 1.42% 1.24% 1.42%
Athila       
Complete elements 7 8 8 4 11 38
   Nucleotides 72,094 90,171 93,015 37,339 119,646 412,265
   Percentage of total nucleotides 0.38% 0.87% 0.67% 0.41% 0.69% 0.60%
Tat       
Complete elements 14 10 8 6 8 46
   Nucleotides 131,154 102,534 83,327 68,754 103,112 591,944
   Percentage of total nucleotides 0.44% 0.54% 0.52% 0.46% 0.56% 0.50%
Metavirus       
Complete elements 16 16 29 8 13 82
   Nucleotides 106,442 127,097 199,361 55,259 96,777 748,231
   Percentage of total nucleotides 0.42% 1.03% 1.03% 0.52% 0.33% 0.64%
Non-LTR retrotransposon 49 90 69 32 71 311
Total LTR contribution       
Complete elements 85 76 92 53 70 376
   Nucleotides 634,695 798,606 836,968 457,405 679,255 3,331,357
   Percentage of total nucleotides 2.11% 4.07% 3.57% 2.61% 2.55% 2.84%
Solo LTRs 519 600 1,053 449 647 3,268
   Nucleotides 386,759 373,256 444,804 275,361 364,340 1,844,520
   Percentage of total nucleotides 1.29% 1.90% 1.90% 1.57% 1.37% 1.57%
Both       
   Nucleotides 1,021,454 1,171,862 1,281,772 732,766 1,043,595 5,175,877
   Percentage of total nucleotides 3.40% 5.97% 5.46% 4.18% 3.91% 4.41%