Skip to main content

Advertisement

Table 1 Results of data filtering and profile inspection

From: Genome-wide analysis of mRNA lengths in Saccharomyces cerevisiae

Spot type Number of spots on each array Number of profiles after filtering (threshold 2.0) Number of profiles matched to a gene
ORF 7,492 (6,398) 6,031 (5,498) 5,846 (5,304)
Intergenic 6,389 3,689 2,998
Intron 157 (133) 32 28
LTR 141 37 6
Mitochondrial 138 (71) 40 (28) 18 (12)
snRNA/snoRNA 44 3 2
tRNA 42 3 0
Ty 31 (28) 12 12
rRNA 23 (19) 17 (14) 17 (14)
Centromeric 16 1 0
Telomeric 10 2 1
Total 14,483 (13,291) 9,867 (9,311) 8,928 (8,377)
  1. As these microarrays contained duplicated spots, the parentheses represent the number of unique spots or profiles in the dataset.