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Figure 1 | Genome Biology

Figure 1

From: Expression profiling of the schizont and trophozoite stages of Plasmodium falciparumwith a long-oligonucleotide microarray

Figure 1

Schematic of the ArrayOligoSelector oligonucleotide-selection algorithm. Oligonucleotide selection begins with the collection of all possible 70 mer oligonucleotides from a given ORF. Four filters are executed in parallel: selection for uniqueness within the genome, an optional user-defined pattern filter, avoidance of significant secondary structure (self-binding), and avoidance of low-complexity sequence. The intersection of the set of all oligonucleotides passing these filters are then further selected for a desired base composition and then ranked by proximity to the 3' end of the ORF.

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