Table 3 E+K, and Q+H contents (%) in the 28 proteomes and E+K/Q+H ratios for the Proteome, Chaperonin and Ligase in each organism
From: Preferred codons and amino acid couples in hyperthermophiles
Proteome | Chaperonin | Ligase | ||||
|---|---|---|---|---|---|---|
Strains | E+K/Q+H | E+K(%) | Q+H (%) | G+C(%) | E+K/Q+H | E+K/Q+H |
Hiper - Procarya | ||||||
P. abyssi | 5.21 | 16.53 | 3.17 | 44.6 | 5.68 | 5.72 |
P. horikoshii | 5.35 | 16.87 | 3.15 | 42.0 | 5.33 | 4.9 |
A. aeolicus | 5.31 | 19.01 | 3.58 | 43.2 | 5.47 | 9.39 |
M. jannashii | 6.63 | 19.04 | 2.87 | 31.3 | 6.73 | 8.18 |
A. fulgidus | 4.8 | 15.76 | 3.28 | 43.2 | 5.3 | 5.4 |
T. matitima | 4.6 | 16.53 | 3.59 | 46.1 | 7.64 | 6.18 |
Termo - Procarya | ||||||
M. thermoautotroficum | 3.28 | 12.5 | 3.81 | 49.5 | 3.93 | 3.85 |
T. volcanium | 3.63 | 13.13 | 3.61 | 39.9 | 3.9 | 5.19 |
T. acidophilum | 2.95 | 11.1 | 3.76 | 45.9 | 3.64 | 6.89 |
Sulfulobus | 4.6 | 15.46 | 3.36 | 35.7 | 3.57 | 5.06 |
Meso - Procarya | ||||||
E. coli | 1.47 | 9.98 | 6.75 | 50.7 | 5.3 | 2.7 |
V. cholerae | 1.47 | 11.08 | 7.49 | 47.6 | 2.1 | 1.8 |
D. radiodurans | 1.36 | 8.47 | 6.19 | 66.9 | 6.89 | 2.05 |
M. tuberculosis | 1.1 | 6.32 | 5.75 | 65.6 | 3.32 | 2.62 |
N. miningitidis | 1.89 | 11.75 | 6.22 | 51.4 | 3.69 | 1.53 |
M. genitalium | 2.45 | 15.61 | 6.36 | 35 | 6.5 | 2.31 |
T. pallidum | 1.51 | 9.95 | 6.57 | 52.7 | 6.21 | 1.26 |
P. aeruginosa | 1.21 | 8.4 | 6.9 | 66.4 | 4.8 | 2.25 |
H. influenza | 1.93 | 12.82 | 6.64 | 38 | 4.8 | 2.18 |
B. subtilis | 2.35 | 14.22 | 6.05 | 43.5 | 5.32 | 3.76 |
Synechocystis | 1.38 | 10.24 | 7.39 | 47.6 | 4.23 | 1.53 |
X. fastidiosa | 1.23 | 8.51 | 6.92 | 52.6 | 4.8 | 1.00 |
Halobacterium sp | 1.67 | 8.58 | 5.15 | 66.88 | 1.84 | 2.19 |
Meso - Eucarya | ||||||
S. cerevisiae | 2.25 | 13.79 | 6.12 | 39.7 | 2.93 | 3.33 |
C. elegans | 2.00 | 12.88 | 6.42 | 42.6 | 2.88 | 3.3 |
A. thaliana | 2.28 | 13.01 | 5.74 | 44.2 | 2.22 | 3.2 |
D. melanogaster | 1.51 | 11.99 | 7.92 | 53.9 | 5.31 | 1.44 |
H. sapiens | 1.77 | 12.68 | 7.17 | 52.66 | 5.41 | 2.57 |