Skip to main content

Table 2 Putative protein-coding genes identified in Pirellula marina

From: Gene discovery within the planctomycete division of the domain Bacteria using sequence tags from genomic DNA libraries

Clone number GenBank accession Best BLASTX match E value of best match Species of best match Domain of best match*
Metabolism and biosynthesis      
   B8 BH001139 Transaldolase 4.00E-14 Mycobacterium tuberculosis (O06812) B
   D10 BH001140 Flagellar biosynthesis protein FlhA 4.00E-05 Aquifex aeolicus (O67265) B
   E9 BH001141 Orotate phosphoribosyltransferase 4.00E-07 Methanococcus jannaschii (Q58509) A
   pl2-A7 BH001142 Glutamate synthase 5.00E-25 Bacillus subtilis (P39812) B
   pl2-B11 BH001143 Uroporphyrin-III C-methyltransferase 1.00E-22 Bacillus subtilis (P42437) B
   pl2-C9 BH001144 Glutamate-1-semialdehyde 2,1-aminomutase (GSA) 7.00E-14 Xanthomonas campestris (Q06741) B
   pl2-D11 BH001145 Phosphoribosylamine-glycine ligase (GARS) 4.00E-21 Homo sapiens (P22102) E
   pl2-E2 BH001146 Cytochrome c oxidase polypeptide I 4.00E-08 Squalus acanthias mitochondrion (Q9ZZ52) E(m)
   pl2-F2 BH001147 1-Deoxy-D-xylulose 5-phosphate reductoisomerase 9.00E-44 Zymomonas mobilis (Q9X5F2) B
   pl2-F9 BH001148 Putative sulfatase 1.00E-09 Escherichia coli (P31447) B
   pl2-G7 BH001149 Glucosamine fructose-6-phosphate aminotransferase 6.00E-05 Pyrococcus horikoshii (O57981) A
   A2 BH001150 Vitamin B12 receptor precursor 2.00E-20 Escherichia coli (P06129) B
   C5 BH001151 ABCA protein 3.00E-14 Aeromonas salmonicida (Q07698) B
   pl2-A3 BH001152 O antigen export system ATP-binding protein RfbB 1.00E-06 Klebsiella pneumoniae (Q48476) B
Regulation and signal transduction      
   C9 BH001154 Protein-glutamate methylesterase CheB 2.00E-08 Bacillus subtilis (Q05522) B
   pl2-A11 BH001155 Sensor protein BarA 5.00E-10 Escherichia coli(P26607) B
   pl2-G4 BH001156 Chemotaxis protein CheC 2.00E-05 Bacillus subtilis (P40403) B
DNA replication/insertion      
   C6 BH001157 DNA polymerase I (Pol I) 3.00E-37 Haemophilus influenzae (P43741) B
   C8 BH001158 Transposase for insertion sequence element 1.00E-05 Lactococcus lactis subsp. lactis (P35878) B
   G1 BH001159 ATP-dependent DNA helicase HUS2 4.00E-10 Schizosaccharomyces pombe (Q09811) E
   B2 BH001160 Leucyl-tRNA synthetase (leucine tRNA ligase) 1.00E-25 Thermotoga maritima (Q9WY15) B
   pl2-A10 BH001161 Alanyl tRNA synthetase 6.00E-14 Bacillus subtilis (O34526) B
   F3 BH001162 Ribonuclease E (RNase E) 1.00E-38 Haemophilus influenzae (P44443) B
   H6 BH001163 Inter-alpha-trypsin inhibitor heavy chain H2 precursor 2.00E-06 Mus musculus (Q61703) E
   pl2-D4 BH001164 Putative methionine aminopeptidase B (MAP) peptidase M 3.00E-08 Rickettsia prowazekii (Q9ZCD3) B
Hypothetical proteins      
   A4 BH001153 Hypothetical transcriptional regulator HT1052 6.00E-05 Haemophilus influenzae (P45008) B
   pl2-E10 BH001165 Hypothetical protein MJ1612 4.00E-15 Methanococcus jannaschii (Q59007) A
   pl2-F11 BH001166 Hypothetical 25.5 kDa protein in HupB-COF intergenic region 2.00E-09 Escherichia coli (P77756) B
   pl2-G10 BH001167 Hypothetical 17.3 kDa protein CY1A11.16C 1.00E-13 Mycobacterium tuberculosis (Q50606) B
  1. *B, Bacteria; A, Archaea; E, Eukarya; E(m), eukaryal mitochondrion.