Table 5b List of all orthologous genes in the five proteobacteria (gamma subdivision) genomes in which two or more genomes share predicted attenuators
From: Identification of attenuation and antitermination regulation in prokaryotes
E. coli | H. influenzae | V. cholerae | P. aeruginosa | X. fastidiosa | ||||||
ID | Z-scorea | IDb | No. of predictionsc | IDb | No. of predictionsc | IDb | No. of predictionsc | IDb | No. of predictionsc | Gened |
b3828 | -7.143 | HI1739 | 1 | VC1706 | 0 | PA3587 | 0 | - | - | regulator for metE and metH (metR) |
b2425 | -6.168 | - | - | VC0538 | 1 | - | - | - | - | thiosulfate binding protein (cysP) |
b3066 | -5.002 | HI0532 | 1 | VC0518 | - | PA0577 | 0 | XF0430 | 0 | DNA primase (dnaG) |
b0902 | -4.443 | HI0179 | 1 | VC1869 | 0 | PA1919 | 0 | - | - | pyruvate formate lyase activating enzyme 1 (pflA) |
b3871 | -4.352 | HI0864 | 1 | VC2744 | 0 | PA5117 | 0 | XF1213 | 0 | putative GTP-binding factor (yihK) |
b3181 | -3.889 | HI1331 | 1 | VC0634 | 0 | PA4755 | 0 | XF1108 | 0 | transcription elongation factor (greA) |
b3983 | -3.861 | HI0517 | 1 | VC0324 | 0 | PA4274 | 0 | XF2637 | 0 | ribosomal protein L11 (rplK) |
b0610 | -3.506 | - | - | - | - | PA5274 | 1 | - | - | regulator of nucleoside diphosphate kinase (rnk) |
b3298 | -3.362 | HI0799 | 0 | VC2574 | 1 | PA4241 | 0 | XF1173 | 0 | ribosomal protein S13 (rpsM) |
b0680 | -3.260 | HI1354 | 1 | VC0997 | 0 | PA1794 | 0 | XF1338 | 0 | glutamine tRNA synthetase (glnS) |
b2313 | -2.990 | HI1206 | 1 | VC1003 | 0 | PA3109 | 0 | XF1948 | 0 | membrane protein required for colicin V production (cvpA) |
b0441 | -2.961 | HI1004 | 0 | VC1918 | 1 | PA1805 | 0 | XF1191 | 0 | putative protease maturation protein (ybaU) |
b1253 | -2.808 | HI0827 | 0 | VC1701 | 0 | PA5371 | 1 | - | - | hypothetical protein (yciA) |
b2924 | -2.487 | - | - | VC0480 | 0 | PA4394 | 1 | XF1258 | 0 | putative transport protein (yggB) |
b2140 | -2.289 | HI0270 | 0 | VC1105 | 0 | PA3129 | 1 | - | - | putative regulator protein (yohI) |
b1778 | -2.121 | HI1455 | 1 | VC1998 | 0 | PA2827 | 0 | XF0849 | 0 | hypothetical protein (yeaA) |
b2185 | - | HI1630 | 1 | VC1640 | 1 | PA4671 | 1 | XF2643 | 0 | ribosomal protein L25 (rplY) |
b2944 | - | HI1173 | 1 | VC0471 | 1 | PA1189 | 0 | - | - | hypothetical protein (sprT) |
b3170 | - | HI1282 | 1 | VC0641 | 0 | PA4746 | 0 | XF0233 | 1 | hypothetical protein (yhbC) |
b3936 | - | HI0758 | 1 | VC2679 | 1 | PA5049 | 0 | XF1534 | 0 | ribosomal protein L31 (rpmE) |
b3987e | - | HI0515 | 1 | VC0328 | 1 | PA4270 | 1 | XF2633 | 0 | DNA-directed RNA polymerase (beta subunit) (rpoB) |
b4006 | - | HI0887 | 1 | VC0276 | 1 | PA4854 | 0 | XF1975 | 0 | phosphoribosylaminoimidazolecarboxamide formyltransferase (purH) |